View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_4 (Length: 603)
Name: NF9857_low_4
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Original strand, 21056196 - 21056783
Alignment:
| Q |
18 |
acattgagaaggtgttgctcattgtgtctggaaactttcttatcattgcatgtatttgattcgtttgggaaattactatgataggtatttatgtgctatt |
117 |
Q |
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| T |
21056196 |
acattgagaaggtgttgctcattgtgtctgcaaactttcttatcattgcatgtatttgattcgtttgggaaattactatgataggtatttatgtgctatt |
21056295 |
T |
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| Q |
118 |
atactg-acaaaaattgatnnnnnnnnntatataataatgaaatagaagtcaaattctcatgtgttgcacaaggattgtgcactattgatttggtgaaat |
216 |
Q |
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| T |
21056296 |
atactgcacaaaaattgataaaaaaaa-tatataataatgaaatagaagtcaaattctcatgtggttcacaaggattgtgcactattgatttggtgaaat |
21056394 |
T |
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| Q |
217 |
tatctggagaattctgctttgactataataaaattgagggatagaaaatgcagaatccgtggaaataaattttgcaggaactggactttaagcaagaatg |
316 |
Q |
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| T |
21056395 |
tatctcgagaattctgctttgactataataaaattgagggatagaaaatgcagaatccgtggaaataaattttgcaggaactggactttaagcaagaatg |
21056494 |
T |
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| Q |
317 |
gaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaa--------------acaactagccgcaaaaatgaagatctcg |
402 |
Q |
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| T |
21056495 |
gaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaacaagatagagacaactagccgcaaaaatgaagatctcg |
21056594 |
T |
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| Q |
403 |
aaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaggcgttgtttaatttacat |
502 |
Q |
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| T |
21056595 |
aaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaagcattgtttaatttacat |
21056694 |
T |
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| Q |
503 |
taaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcatttcnnnnnnnattactaaaaggtgatgtcca |
591 |
Q |
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| T |
21056695 |
taaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcgtttctttttttattactaaaaggtgatctcca |
21056783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 203 - 563
Target Start/End: Complemental strand, 26365585 - 26365252
Alignment:
| Q |
203 |
tgatttggtgaaattatctggagaattctgctttgactataataaaattga-gggatagaaaatgcagaatccgtggaaataaattttgcaggaactgga |
301 |
Q |
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| T |
26365585 |
tgatttggtgatattatctggaaaattttgctttgaatacaataagatagttgggatagaaaatgcagaa---------attaaatttgcaggaactgaa |
26365495 |
T |
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| Q |
302 |
ctttaagcaagaatggaaggggtgatcttggttctactgttgcctaatttgagtagaggatttgtttgaagaaacaactagccg--caaaaatgaagatc |
399 |
Q |
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| T |
26365494 |
ctttaagcaagaatggaaggagtgatcttggtccaactgttgcctaatttgagtagaggatttggttgaagagacaacaagctgactaaaaaagaagatc |
26365395 |
T |
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| Q |
400 |
tcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaggcgttgtttaattta |
499 |
Q |
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| T |
26365394 |
ttgaaggtga--atgaatcatacaattttatacaatatgc--------------tattat------tacatttcttgatatttaggtgttgattaattca |
26365317 |
T |
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| Q |
500 |
cattaaatcgcttgagaaaaatgcttctcttg--cacctgtattttgatttactcgacatcatttc |
563 |
Q |
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| T |
26365316 |
cattgaatcgtttgagaaacatgcttct-ttgcacacctgtattttgatttacttgacgtcatttc |
26365252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 26365753 - 26365654
Alignment:
| Q |
20 |
attgagaaggtgttgctcattgtgtctggaaactttcttatcattgcatgtatttgattc-gtttgggaaattactatgataggtatttatgtgctatta |
118 |
Q |
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| T |
26365753 |
attgagaaggttttgctcattgtgtcagcaaacatgc-tagcattgcatgcatttgattctatttgggaaattaatatgatatgcatctatgtgttatta |
26365655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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