View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_40 (Length: 282)
Name: NF9857_low_40
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 26955671 - 26955411
Alignment:
| Q |
7 |
ttggtggttagtactacttgatttttgccccttgttactagtgcttgttggatttgaattttatcgtatcaatttgattaattttctcatttatagaggt |
106 |
Q |
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| T |
26955671 |
ttggtggttagtactacttgatttttgccccttgttactagttcttgttggatttgaattttatcgtatcatgttgattaattttctcatttatagaggt |
26955572 |
T |
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| Q |
107 |
attcatataaaatcaataattgataacatgtaaacatgtaaaattaaatcttgaatgtgttaaaaatattagcaattgaatttcttatcaattgttacca |
206 |
Q |
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| T |
26955571 |
attcatataaaatcaataattgataacatgtaaacatgtaaaattaaatcttgaatgtgttaaaaatattagcaattgaatttcttataaattgttaaca |
26955472 |
T |
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| Q |
207 |
tttcattgcgttggaatatcaagtgtgagcaagagtccaggatttgatgaaaggatgttga |
267 |
Q |
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| T |
26955471 |
tttcattgcgttggaatatcaagtgtgagcaagagtctaggatttgatgaaaggatgttga |
26955411 |
T |
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