View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_42 (Length: 270)

Name: NF9857_low_42
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_42
NF9857_low_42
[»] chr2 (4 HSPs)
chr2 (16-270)||(5700058-5700299)
chr2 (18-107)||(19261716-19261803)
chr2 (36-90)||(13266913-13266969)
chr2 (139-241)||(13266987-13267089)
[»] chr5 (3 HSPs)
chr5 (21-243)||(42954776-42954998)
chr5 (136-208)||(15026936-15027008)
chr5 (128-180)||(5232420-5232472)
[»] chr8 (9 HSPs)
chr8 (18-243)||(36315875-36316100)
chr8 (18-244)||(11364458-11364681)
chr8 (20-235)||(26998274-26998489)
chr8 (19-177)||(9617810-9617972)
chr8 (18-79)||(17011624-17011685)
chr8 (18-79)||(17545516-17545577)
chr8 (124-181)||(17011543-17011600)
chr8 (124-181)||(17545601-17545658)
chr8 (128-207)||(39721118-39721197)
[»] chr6 (5 HSPs)
chr6 (122-243)||(13436794-13436914)
chr6 (39-181)||(29181642-29181786)
chr6 (25-114)||(28983527-28983616)
chr6 (136-181)||(165904-165949)
chr6 (143-208)||(14003346-14003411)
[»] chr7 (6 HSPs)
chr7 (10-177)||(29346722-29346890)
chr7 (18-165)||(29367259-29367405)
chr7 (156-208)||(29292199-29292251)
chr7 (20-111)||(32471143-32471234)
chr7 (128-207)||(3756682-3756762)
chr7 (25-85)||(29293427-29293486)
[»] chr4 (5 HSPs)
chr4 (167-243)||(23407669-23407744)
chr4 (18-197)||(4578364-4578541)
chr4 (20-85)||(23406633-23406698)
chr4 (98-151)||(23407625-23407678)
chr4 (22-59)||(49272623-49272660)
[»] chr1 (1 HSPs)
chr1 (18-162)||(29274575-29274719)
[»] chr3 (5 HSPs)
chr3 (38-107)||(32756502-32756569)
chr3 (36-90)||(46506041-46506095)
chr3 (91-181)||(46506083-46506171)
chr3 (18-58)||(531231-531270)
chr3 (18-58)||(564186-564225)
[»] scaffold0027 (1 HSPs)
scaffold0027 (36-172)||(16415-16548)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 5700058 - 5700299
Alignment:
Q  16 aaggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttctatctttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||||||||||||||||||     
T  5700058 aaggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtagagtaatg-------------acttagtcttcttctatctttc 5700144  T
Q  116 ccttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttat 215  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  5700145 ctttaatgtttctatgtaccaagaacatcaattttaattgagttctaatctatcaattttacctttcatttcacaatcaattcacgattattatttttat 5700244  T
Q  216 tccattataaattttaggaatcattacactttctcaatctctccaatgaacaaga 270  Q
    | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5700245 ttcattataaattttaggaattattacattttctcaatctctccaatgaacaaga 5700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 19261803 - 19261716
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttc 107  Q
    ||||||||||||||||||  |||||| ||||||||||||||| |||||| |||| ||||||||||| ||||||| |||||||||||||||    
T  19261803 ggtatgaagaaaaatgatgaaagtctatcctctctccctttgatactct-tagtagagtaatggctaagtctta-gacttagtcttcttc 19261716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 13266913 - 13266969
Alignment:
Q  36 tgaagtctctcctctctccctttggtact--ctctagtcgagtaatggcttagtctt 90  Q
    |||||||||||||||||||||||||||||  ||||||| |||||| |||||||||||    
T  13266913 tgaagtctctcctctctccctttggtactccctctagtagagtaacggcttagtctt 13266969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 13266987 - 13267089
Alignment:
Q  139 aacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttattccattataaattttaggaatca 238  Q
    |||||||||||||||||||||||||| ||||||||  |||||| |||  | |||  |||  ||||||||  |||||||||||| | ||||||  ||||||    
T  13266987 aacatcaattttaattgagttctaatatatcaattcaacctttgattccataattgatttgcaattatccattttattccattctcaattttgagaatca 13267086  T
Q  239 tta 241  Q
    |||    
T  13267087 tta 13267089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 42954998 - 42954776
Alignment:
Q  21 atgaagaaaaatgattgaagtctctcctct--ctccctttggtactctctagtcgagtaatggcttagtcttatgactt-agtcttcttctatcttttcc 117  Q
    |||| ||||||||||  ||||| |||||||  |||||||||| |||||||| | ||||||||||| ||||||| ||||| |||||||||||||||||||     
T  42954998 atgatgaaaaatgatgaaagtcactcctctttctccctttgg-actctctaatagagtaatggctaagtctta-gactttagtcttcttctatcttttct 42954901  T
Q  118 ttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttattc 217  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  42954900 ttaatgtttttatgtacctagaacatcaattttaattgagttctaatctatcaattttacctttcatttcacaatcaattcacaattatca-ttttattc 42954802  T
Q  218 cattataaattttaggaatcattaca 243  Q
    |||||| |||||||| || |||||||    
T  42954801 cattatcaattttagaaaccattaca 42954776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 15027008 - 15026936
Alignment:
Q  136 aagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatca 208  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||||| || ||| |||| | ||||||||    
T  15027008 aagaacattaattttaattgagttctaatctatcaattttactcttcattcaataattaatttaaaattatca 15026936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 5232420 - 5232472
Alignment:
Q  128 tatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctt 180  Q
    ||||||| || |||| ||| | |||||||||||| ||||||||||||||||||    
T  5232420 tatgtactaaaaacaccaactataattgagttcttatctatcaattttacctt 5232472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 36316100 - 36315875
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttctatcttttcc 117  Q
    |||| |||||||||||||  || ||||||||||||||||||| ||||||||||| ||||||||  ||||||||| |||||| ||||||||||| |||||     
T  36316100 ggtaggaagaaaaatgatgaaaatctctcctctctccctttgatactctctagtagagtaatgatttagtcttaggacttaatcttcttctatgttttct 36316001  T
Q  118 ttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttattc 217  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||| | |||| |||||||||||| | | || |||| | | ||| |||||| |||||||     
T  36316000 ttaatgtttatatgtaccaagaacataaattttaattgagttctcaactattaattttacctttaaataaataatccaattacatttatcaattttattt 36315901  T
Q  218 cattataaattttaggaatcattaca 243  Q
    |||| | ||||||  |||||||||||    
T  36315900 cattctcaattttgagaatcattaca 36315875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 11364681 - 11364458
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctta-gtcttatgacttagtcttcttctatcttttc 116  Q
    |||||||||||||||||   | || ||||||||| ||||||||||||||| ||| ||||||||||||| |||||  ||||| ||||||||||||||||||    
T  11364681 ggtatgaagaaaaatgacata-gtatctcctctc-ccctttggtactctcaagtagagtaatggcttaagtctttcgacttggtcttcttctatcttttc 11364584  T
Q  117 cttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttatt 216  Q
    |||    ||| ||||||| ||||||| |||||||||||| |||||||||  |||||||||||||| |||||| || ||||| ||||||||||  |||||     
T  11364583 ctttcccttt-tatgtactaagaacaccaattttaattgggttctaatccctcaattttacctttgatttaataaacaatttacaattatca-atttatc 11364486  T
Q  217 ccattataaattttaggaatcattacac 244  Q
     |||| | ||||||||||| ||||||||    
T  11364485 acattctcaattttaggaaccattacac 11364458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 26998274 - 26998489
Alignment:
Q  20 tatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttctatcttttcc-t 118  Q
    ||||||| ||||||||   |||||||| |||||| |||| ||||||||||||  |||||||||||||| ||| |||||||||||||||| | |||||| |    
T  26998274 tatgaagtaaaatgatgagagtctctcttctctctctttagtactctctagtaaagtaatggcttagttttaagacttagtcttcttctgtattttcctt 26998373  T
Q  119 taatgt-ttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttattc 217  Q
    |  | | |||||||||  ||||||| ||| | | |||||||||  |||||||||||||| |||| | |||| |||||||| |||||||||  |||||||     
T  26998374 ttctctcttctatgtaataagaacaccaaatattattgagttc-gatctatcaattttatctttaagttaataatcaatt-acaattatccattttattt 26998471  T
Q  218 cattataaattttaggaa 235  Q
    |||| | |||||||||||    
T  26998472 cattctcaattttaggaa 26998489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 9617972 - 9617810
Alignment:
Q  19 gtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtc----gagtaatggcttagtcttatg-acttagtcttcttctatctt 113  Q
    ||||||||||||||||  ||||||| |||||||| ||| ||||||||||||||     |||||||| ||||   || || | ||||||||||||||||||    
T  9617972 gtatgaagaaaaatgaa-gaagtctttcctctcttcctgtggtactctctagtatagggagtaatgacttaagtttttgtatttagtcttcttctatctt 9617874  T
Q  114 ttccttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttac 177  Q
    ||| ||||| ||||||||||| || ||||||||||||||||  ||||| | |||||||||||||    
T  9617873 ttctttaatatttctatgtaccaaaaacatcaattttaattcggttctcaactatcaattttac 9617810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 17011685 - 17011624
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaat 79  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  17011685 ggtatgaagaaaaatgatgcaagtctctcctctctccctttggtactctctagtagagtaat 17011624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 17545516 - 17545577
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaat 79  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  17545516 ggtatgaagaaaaatgatgcaagtctctcctctctccctttggtactctctagtagagtaat 17545577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 17011600 - 17011543
Alignment:
Q  124 tttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttaccttt 181  Q
    ||||||||||| |||||| ||||||||||||| ||||| | |||||||||||| ||||    
T  17011600 tttctatgtaccaagaacttcaattttaattgggttctcaactatcaattttatcttt 17011543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 17545601 - 17545658
Alignment:
Q  124 tttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttaccttt 181  Q
    ||||||||||| |||||| ||||||||||||| ||||| | |||||||||||| ||||    
T  17545601 tttctatgtaccaagaacttcaattttaattgggttctcaactatcaattttatcttt 17545658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 39721197 - 39721118
Alignment:
Q  128 tatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatc 207  Q
    ||||||| ||||||||||| | ||| | |||||| |||| |||||||||||||| | |||| |||||||| || ||||||    
T  39721197 tatgtactaagaacatcaactctaagtaagttctcatctctcaattttacctttgaattaataatcaatttacgattatc 39721118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 13436794 - 13436914
Alignment:
Q  122 tgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatcatttttattccatt 221  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  13436794 tgtttctacgtacctagaacatcaattttaattgagttccaatctatcaattttacctttcatttcacaatcaattcacaattatca-ttttattccatt 13436892  T
Q  222 ataaattttaggaatcattaca 243  Q
    || ||||||||||| |||||||    
T  13436893 atcaattttaggaaccattaca 13436914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 29181642 - 29181786
Alignment:
Q  39 agtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttctatcttttccttaatgt--ttctatgtacga 136  Q
    |||||||||||||||||||| ||||||| |||| |||||||| |||||||||  |||||||| ||||| ||||||| | ||  | |  || ||||||| |    
T  29181642 agtctctcctctctccctttagtactctttagtagagtaatgacttagtcttgggacttagttttcttgtatctttccttttctcttcttttatgtacta 29181741  T
Q  137 agaacatcaattttaattgagttctaatctatcaattttaccttt 181  Q
    |||||| ||| | |||||| ||||| || ||||||||||| ||||    
T  29181742 agaacaccaactataattgtgttctcatttatcaattttatcttt 29181786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 28983527 - 28983616
Alignment:
Q  25 agaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctt-agtcttatgacttagtcttcttctatcttt 114  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||| | |||||||| |||  |||||| |||| |||||||||||||||||    
T  28983527 agaaaaatgat-gaagtctcccctctctccgtttggtactctctaatagagtaatgacttgggtcttaggactaagtcttcttctatcttt 28983616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 165904 - 165949
Alignment:
Q  136 aagaacatcaattttaattgagttctaatctatcaattttaccttt 181  Q
    ||||||| |||||||||||| |||||||||||||| ||||| ||||    
T  165904 aagaacaccaattttaattgtgttctaatctatcacttttatcttt 165949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 14003346 - 14003411
Alignment:
Q  143 tcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaattcacaattatca 208  Q
    |||||||||||  ||||||| ||||||||||||||||||||  | | ||||||||||  |||||||    
T  14003346 tcaattttaatgaagttctagtctatcaattttacctttcacatgataatcaattcatcattatca 14003411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 29346890 - 29346722
Alignment:
Q  10 gaagcaaaggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctta-gtcttatgacttagtcttcttct 108  Q
    |||||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||    | |||||| |||| |||||  |||| |||||||||||    
T  29346890 gaagcaaaggcatgaagaaaaatgatgaaagtctctcctttctccctttggtactctctttgagggtaatgacttaagtctttggactaagtcttcttct 29346791  T
Q  109 atcttttccttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttac 177  Q
    |||||||| ||| | ||| ||||||| |||||||||||||||||||| ||||| | |||||||||||||    
T  29346790 atcttttctttagtatttttatgtaccaagaacatcaattttaattgggttctcaactatcaattttac 29346722  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 29367405 - 29367259
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctta-gtcttatgacttagtcttcttctatcttttc 116  Q
    ||||||||||||| |||| ||||||| || |||||| ||||  ||||||||||| |||||||| |||| |||||| ||||||||||||||||||| ||      
T  29367405 ggtatgaagaaaagtgat-gaagtctatcatctctctctttaatactctctagtagagtaatgacttaagtcttaggacttagtcttcttctatccttct 29367307  T
Q  117 cttaatgtttctatgtacgaagaacatcaattttaattgagttctaatc 165  Q
    |||  | ||| ||||||| ||||| |||||||||| || ||||||||||    
T  29367306 ctttctcttt-tatgtaccaagaagatcaattttatttaagttctaatc 29367259  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 29292251 - 29292199
Alignment:
Q  156 agttctaatctatcaattttacctttcatttaacaatcaattcacaattatca 208  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  29292251 agttctaatctatcaattttacctttcacttaataatcaattcacaattatca 29292199  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 32471234 - 32471143
Alignment:
Q  20 tatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctta-gtcttatgacttagtcttcttctatc 111  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    ||||||||  |||| |||||   ||||||||||||||||||    
T  32471234 tatgaagaaaattgat-gaagtctctcctctctccctttggtactctccttgcgagtaataacttatgtctttgaacttagtcttcttctatc 32471143  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 3756762 - 3756682
Alignment:
Q  128 tatgtacgaagaacatcaattttaattgagttctaatctatcaa-ttttacctttcatttaacaatcaattcacaattatc 207  Q
    ||||||| ||||||| ||| | ||||||| |||| ||||||||| |||||||||| |||||| ||||||||  ||||||||    
T  3756762 tatgtactaagaacaccaactctaattgaattctcatctatcaatttttacctttaatttaataatcaatttgcaattatc 3756682  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 29293486 - 29293427
Alignment:
Q  25 agaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctta 85  Q
    ||||||||||| |||||||||||||||||  || ||||||||||| | |||||||| ||||    
T  29293486 agaaaaatgat-gaagtctctcctctctcttttgggtactctctaatagagtaatgcctta 29293427  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 23407669 - 23407744
Alignment:
Q  167 atcaattttacctttcatttaacaatcaattcacaattatcatttttattccattataaattttaggaatcattaca 243  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  23407669 atcaattttacctttcatttcacaatcaattcacaattatca-ttttattccattatcaattttaggaaccattaca 23407744  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 4578364 - 4578541
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctt-agtcttatgacttagtcttcttctatcttttc 116  Q
    |||||||| ||||||||| ||||||||||||||| | ||||||||||||||||| ||| ||| |||| ||||||| ||  ||||||||||  ||||||||    
T  4578364 ggtatgaaaaaaaatgat-gaagtctctcctctccctctttggtactctctagtagagcaatagcttaagtctta-gagatagtcttctttaatcttttc 4578461  T
Q  117 c-ttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttacctttcatttaacaatcaatt 197  Q
    | ||  |  || ||| ||| | ||||| ||| |||||||| ||||| ||| ||||||||||  ||| |||||||||||||||    
T  4578462 catttctcatt-tatttactacgaacaccaactttaattgtgttctcatcaatcaatttta-ttttgatttaacaatcaatt 4578541  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 23406633 - 23406698
Alignment:
Q  20 tatgaagaaaaatgattgaagtctctcctctctccctttggtactctctagtcgagtaatggctta 85  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||||    |||||||||||||    
T  23406633 tatgaagaaaaatgatgaaagtctctcctctctctctttggtactctctttgagagtaatggctta 23406698  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 23407625 - 23407678
Alignment:
Q  98 agtcttcttctatcttttccttaatgtttctatgtacgaagaacatcaatttta 151  Q
    ||||||||||||||||||| |||||  |||||||||| ||||||||||||||||    
T  23407625 agtcttcttctatcttttctttaatagttctatgtaccaagaacatcaatttta 23407678  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 49272623 - 49272660
Alignment:
Q  22 tgaagaaaaatgattgaagtctctcctctctccctttg 59  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  49272623 tgaagaaaaatgatgaaagtctctcctctctccctttg 49272660  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 29274575 - 29274719
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctc-cctttggtactctctagtcgagtaatggctt-agtcttatgacttagtcttcttctatctttt 115  Q
    |||||||| || |||||| ||||||||||||||| | |||||| ||||||||||| ||||||||| || |||| |  ||||||| |||||||||||||||    
T  29274575 ggtatgaaaaataatgat-gaagtctctcctctccctcctttgatactctctagtagagtaatggtttaagtccttggacttagccttcttctatctttt 29274673  T
Q  116 ccttaatgtttctatgtacgaagaacatcaattttaattgagttcta 162  Q
     ||| || ||| ||||||| || || | || ||||||||| ||||||    
T  29274674 tctttatcttt-tatgtactaaaaataccagttttaattgggttcta 29274719  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 32756569 - 32756502
Alignment:
Q  38 aagtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttc 107  Q
    ||||||||||||||||||||||||||||| | || ||||||||||| ||||||| ||||| |||||||||    
T  32756569 aagtctctcctctctccctttggtactct-tggtagagtaatggctaagtctta-gacttggtcttcttc 32756502  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 46506041 - 46506095
Alignment:
Q  36 tgaagtctctcctctctccctttggtactctctagtcgagtaatggcttagtctt 90  Q
    ||||||||||||||||| |||| ||||||| ||||| |||||||| |||||||||    
T  46506041 tgaagtctctcctctcttccttgggtactccctagtagagtaatgacttagtctt 46506095  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 46506083 - 46506171
Alignment:
Q  91 atgacttagtcttcttctatcttttccttaatgtttctatgtacgaagaacatcaattttaattgagttctaatctatcaattttaccttt 181  Q
    |||||||||||||||| ||||||| ||||  | |||| ||||||  ||||||| | |||||||||| ||||||||||||||||||| ||||    
T  46506083 atgacttagtcttcttgtatcttt-cctttctctttc-atgtacttagaacataagttttaattgatttctaatctatcaattttatcttt 46506171  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 531231 - 531270
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctcccttt 58  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  531231 ggtatgaagaaaattgat-gaagtctctcctctctcccttt 531270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 564186 - 564225
Alignment:
Q  18 ggtatgaagaaaaatgattgaagtctctcctctctcccttt 58  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  564186 ggtatgaagaaaattgat-gaagtctctcctctctcccttt 564225  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 16548 - 16415
Alignment:
Q  36 tgaagtctctcctctctccctttggtactctctagtcgagtaatggcttagtcttatgacttagtcttcttctatcttttccttaatgtttctatgtacg 135  Q
    ||||||| || ||||||||||||| || |||||||| || ||||| |||||||||| ||||||    |||||||||||||||||  |  ||  ||||||     
T  16548 tgaagtcactactctctccctttgatattctctagtagactaatgacttagtcttaggactta---atcttctatcttttcctttcttctttcatgtact 16452  T
Q  136 aagaacatcaattttaattgagttctaatctatcaat 172  Q
    ||||||| ||| | ||||||  |||| ||||||||||    
T  16451 aagaacaccaactctaattggattctcatctatcaat 16415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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