View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9857_low_48 (Length: 250)
Name: NF9857_low_48
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37961236 - 37960996
Alignment:
| Q |
1 |
cgtttgtccaaacatgcacttctaagcataaaactagtattcattaccaaccttgttgctttggtaattactgagaccagtgcagattccgtttgtgact |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
37961236 |
cgttagtccaaacatgcacttctaagcataaaactggtattcattactaaccttgttgctttggtaattacggaggccagtgcagattccgtttgtgact |
37961137 |
T |
|
| Q |
101 |
tcaagtagtttctggtactcaggattgagctgtacttcttttgaccaatatccagcggttaaatttatgatttgcacaagtaattcagcttctcttttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37961136 |
tcaagtagtttctggtactcaggattgagctgtacttcttttgaccaatatccagcggttaaatttatgatttgcacaagtaatttagcttctcttttgg |
37961037 |
T |
|
| Q |
201 |
atttgtttccttcattgacccagcttgaaaaccacctttgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37961036 |
atttgtttccttcattgacccagcttgaaaaccacctttgc |
37960996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 12633408 - 12633643
Alignment:
| Q |
7 |
tccaaacatgcacttctaagcataaaa-ctagtattcattaccaaccttgttgctttggtaattactgagaccagtgcagattccgtttgtgacttcaag |
105 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||||| ||| |||||||||| |||| ||||||| ||| || |||||||||| || ||||| | ||| |
|
|
| T |
12633408 |
tccaaacatgtacttctaagcataaaaactagcattcactactaaccttgttgatttgttaattacggaggccggtgcagattctattagtgacataaag |
12633507 |
T |
|
| Q |
106 |
tagtttctggtactcaggattgagctgtacttcttttgaccaatatccagcggttaaatttatgatttgcacaagtaattcagcttctcttttggatttg |
205 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12633508 |
tagtttctggtactcagggttgagttgtacttcttttgacaaatatccagcggttaaatttatgatttgcacaagtaattcagcttctcttttggatttg |
12633607 |
T |
|
| Q |
206 |
tttccttcattgacccagcttgaaaaccacctttgc |
241 |
Q |
| |
|
|||||||||| | ||||||||| |||||||||||| |
|
|
| T |
12633608 |
tttccttcatagtgccagcttgagaaccacctttgc |
12633643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 31151061 - 31151269
Alignment:
| Q |
6 |
gtccaaacatgcacttctaagcataaaactagtattcattaccaaccttgttgctttggtaattactgagaccagtgcagattccgtttgtgacttcaag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||| ||| |||||||||||| ||||||||| ||||| |
|
|
| T |
31151061 |
gtccaaacatgcacttctaagcataaaactagtattcattattaacctaat-gctttggaaattacggaggccagtgcagattatgtttgtgacatcaag |
31151159 |
T |
|
| Q |
106 |
tagtttctggtactcaggattgagctgtacttcttttgaccaatatccagcggttaaatttatgatttgcacaagtaattcagcttctcttttggatttg |
205 |
Q |
| |
|
|||||| | |||||| |||||||| ||||| ||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31151160 |
tagtttattgtactctggattgagatgtacatcttttgtccaatttcccgcggttaaatttatgatttccacaagtaattcagcttctcttttggatttg |
31151259 |
T |
|
| Q |
206 |
tttccttcat |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
31151260 |
tttccttcat |
31151269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University