View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_49 (Length: 250)

Name: NF9857_low_49
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_49
NF9857_low_49
[»] chr2 (6 HSPs)
chr2 (1-240)||(19393085-19393321)
chr2 (177-227)||(9061625-9061675)
chr2 (177-240)||(9291563-9291621)
chr2 (177-240)||(12012996-12013054)
chr2 (182-240)||(12019338-12019391)
chr2 (208-240)||(12006566-12006598)
[»] chr4 (1 HSPs)
chr4 (1-158)||(28802937-28803091)
[»] scaffold0667 (1 HSPs)
scaffold0667 (177-240)||(4070-4128)
[»] chr3 (1 HSPs)
chr3 (177-240)||(37462095-37462153)
[»] chr1 (1 HSPs)
chr1 (177-237)||(29453744-29453799)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 19393085 - 19393321
Alignment:
Q  1 ttaacgtccatttgataaattttaaagtcaagacaacaagcaaatgccaaaagaagaagtatatcctcaaagcgggctacaggaggagcataagtatcct 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  19393085 ttaacgtccatttgataaagtttaaagtcaagacaacaagcaaatgccaaaagaagaagtatatcctcaaagcgggctacagga---gcataagtatcct 19393181  T
Q  101 cgtagttgatcccttcatcttggttgtatccttttgccataagccttgccttgtttctataatatatgtagttaaaaaattgaattcttattataggaaa 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19393182 cgtagttgatcccttcctcttggttgtatccttttgccataagccttgccttgtttctataatacatgtagttaaaaaattgaattcttattataggaaa 19393281  T
Q  201 aggattagattctctaattactttgaagtctcaacctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19393282 aggattagattctctaattactttgaagtctcaacctttg 19393321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 9061625 - 9061675
Alignment:
Q  177 aaattgaattcttattataggaaaaggattagattctctaattactttgaa 227  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  9061625 aaattgaattcttgttataggacaaggatttgattctctaattactttgaa 9061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 9291621 - 9291563
Alignment:
Q  177 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 240  Q
    |||||||||||||||||||||| |||||||     ||||||||||||||||||||| |||||||    
T  9291621 aaattgaattcttattataggacaaggatt-----ctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 12012996 - 12013054
Alignment:
Q  177 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 240  Q
    |||||||||||||||||||||| |||||||     ||||||||||||||||||||| |||||||    
T  12012996 aaattgaattcttattataggacaaggatt-----ctctaattactttgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 12019338 - 12019391
Alignment:
Q  182 gaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 240  Q
    ||||||||||||||||| |||||||     ||||||||||||||||||||| |||||||    
T  12019338 gaattcttattataggacaaggatt-----ctctaattactttgaagtctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 12006566 - 12006598
Alignment:
Q  208 gattctctaattactttgaagtctcaacctttg 240  Q
    ||||||||||||||||||||||||| |||||||    
T  12006566 gattctctaattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 28802937 - 28803091
Alignment:
Q  1 ttaacgtccatttgataaattttaaagtcaagacaacaagcaaatgccaaaagaagaagtatatcctcaaagcgggctacaggaggagcataagtatcct 100  Q
    ||||| |||||||||||||  ||||||||||||||||||  ||||||||||| |||| ||||  |||||| |||||||||    ||||| ||||| ||||    
T  28802937 ttaacatccatttgataaagcttaaagtcaagacaacaataaaatgccaaaataagacgtatgacctcaaggcgggctac---gggagcgtaagtctcct 28803033  T
Q  101 cgtagttgatcccttcatcttggttgtatccttttgccataagccttgccttgtttct 158  Q
     |||||  ||||| || |||| |||||| |||||||||| |||| ||||||| |||||    
T  28803034 agtagtcaatcccctcctctttgttgtacccttttgccacaagctttgccttatttct 28803091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 4128 - 4070
Alignment:
Q  177 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 240  Q
    ||||||||||||||||||||||||||||||     || ||||||||||||| |||| |||||||    
T  4128 aaattgaattcttattataggaaaaggatt-----ctataattactttgaattctctacctttg 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 37462153 - 37462095
Alignment:
Q  177 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 240  Q
    ||||||||||||| |||||||| |||||||     ||||||||||||||||||||| |||||||    
T  37462153 aaattgaattcttgttataggacaaggatt-----ctctaattactttgaagtctctacctttg 37462095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 29453744 - 29453799
Alignment:
Q  177 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacct 237  Q
    |||||||||||||||||||| | |||     ||||||||||||||||||||||||| ||||    
T  29453744 aaattgaattcttattatagaacaag-----gattctctaattactttgaagtctctacct 29453799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University