View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_5 (Length: 600)
Name: NF9857_low_5
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 55171320 - 55170751
Alignment:
| Q |
1 |
tacattacagagaacagtcctgccaatgtcaattcttggggatctaagaacggagaatttcgttctgttggcaaaaattctggaccacaagcttcactga |
100 |
Q |
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| T |
55171320 |
tacattacagagaacagtcctgccaatgtcaattcttggggatctaagaacggagaatttcgttctgttggcaaaaattctggaccacaagcttcactga |
55171221 |
T |
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| Q |
101 |
aatgtcccagcggaaaaaagattgttgctgtcgagtttgcaagctttggtaatcctagtggttactgtggagattttgctattggaaattgtaacggtgg |
200 |
Q |
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| T |
55171220 |
aatgtcccagcggcaaaaagattgttgctgtcgagtttgcaagctttggtaatcctagtggttactgtggagattttgctcttggaaattgtaacggtgg |
55171121 |
T |
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| Q |
201 |
tgctgctaagggtgttgttgagaaggcatgcttggggaaagaagaatgtttggttgaagtgaaccgtgcaaacttcaacggtcagggctgcgcaggttca |
300 |
Q |
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| T |
55171120 |
tgctgctaagggtgttgttgagaaggcatgcttggggaaagaagaatgtttggttgaagtgaaccgtgcaaacttcaacggtcagggctgcgcaggttca |
55171021 |
T |
|
| Q |
301 |
gtgaatacacttgctatccaagctaagtgttcctactagagtgagtgagttaggtggattgatttggccaactatagcccagaagctcaaaaatgtcatt |
400 |
Q |
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| T |
55171020 |
gtgaatacacttgctatccaagctaagtgttcctactagagtgagtgagttaggtggattgatttggccaactatagcccagaagctcaaaaatgtcatt |
55170921 |
T |
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| Q |
401 |
gcaacaattcaatgcttgtattatctgtttatctacattcaattacatatatatatcaaaagattgcagtgatccaattcaaaatgatcttgacaactac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55170920 |
gcaacaattcaatgcttgtattatctgtttatctacatccaattacatat--atatcaaaagattgcagtgatccaattcaaaatgatcttgacaactac |
55170823 |
T |
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| Q |
501 |
atcatatctcagtacatagtatatatcaatagttccattcataattataaggaaaaagcgaaaatacggagcat |
574 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
55170822 |
atc--atctcagtacatagtatatatcaatagttccattcataattagaaggaaaaagcgaaaataaggagcat |
55170751 |
T |
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