View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9857_low_51 (Length: 248)
Name: NF9857_low_51
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 32283321 - 32283118
Alignment:
| Q |
1 |
ataatcaaatataagatttgtgccaaactcgatgacacaacttcacatgtattcttatatcaaggaactcatcaccctcaagaagcaaaatatgacttat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32283321 |
ataatcaaatataagatttgtgtcaaactcgatgacacaacttcacatgtattcttatatcaaggaactcatcaccctcaagaagcaaaatatgacttag |
32283222 |
T |
|
| Q |
101 |
aaaatgtcatatgaaaacttccaacgaattaaaaattcaaaaaagaatgacgtttttgtgtcaaataacaaacttaacaatta-aaaacatttgagtaaa |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32283221 |
aacatgtcatatgaaaacttccaacgaattaaaaattcaaaaaagaatgacgttgttgtgtcaaataacaaacttaacaattacaaaacatttgagtaaa |
32283122 |
T |
|
| Q |
200 |
caaa |
203 |
Q |
| |
|
|||| |
|
|
| T |
32283121 |
caaa |
32283118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 15702556 - 15702353
Alignment:
| Q |
1 |
ataatcaaatataagatttgtgccaaactcgatgacacaacttcacatgtattcttatatcaaggaactcatcaccctcaagaagcaaaatatgacttat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15702556 |
ataatcaaatataagatttgtgtcaaactcgatgacacaacttcacatgtattcttatatcaaggaactcatcaccctcaagaagcaaaatatgacttag |
15702457 |
T |
|
| Q |
101 |
aaaatgtcatatgaaaacttccaacgaattaaaaattcaaaaaagaatgacgtttttgtgtcaaataacaaacttaacaatta-aaaacatttgagtaaa |
199 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15702456 |
aacatgtcatatgaaaacttccaacgaattaaaaattcaaaaaagaatgacgttgttgtgtcaaataacaaacttaacaattacaaaacatttgagtaaa |
15702357 |
T |
|
| Q |
200 |
caaa |
203 |
Q |
| |
|
|||| |
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|
| T |
15702356 |
caaa |
15702353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 12513994 - 12513804
Alignment:
| Q |
13 |
aagatttgtgccaaactcgatgacacaacttcacatgtattcttatatcaaggaactcatcaccctcaagaagcaaaatatgacttataaaatgtcatat |
112 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12513994 |
aagatttgcgccaaactcgatgacacaacttcacatgtattcttatatcaaggaactcatcaccctcaagaagcaaaatatgacttataacatgtcatat |
12513895 |
T |
|
| Q |
113 |
gaaaacttccaacgaattaaaaattcaaaaaagaatgacgtttttgtgtcaaataacaaacttaacaattaaaaacatttgagtaaacaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
12513894 |
gaaaacttccaacgaattaaaaattcaaaaaagaatgacgttgttgtgtcaaataacaaacttaaaaattaaaaacatttgagtaaacaaa |
12513804 |
T |
|
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