View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_53 (Length: 240)
Name: NF9857_low_53
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_53 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 19392545 - 19392775
Alignment:
| Q |
17 |
accttttgcaatcaacgtcgatgctaaattcatccttgtcgattgagagagctgatgccatgagagtggaaatagacttgcaatcttgcatatcaaactt |
116 |
Q |
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| T |
19392545 |
accttttgcaatcaacgtcgatgctaaattcatccttgtcgattgagagagctgatgccatgggagaggaaatagacttgcaatcttgcatatcaaactt |
19392644 |
T |
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| Q |
117 |
cttgagtagctccaaagcatatttagtttgattgacaaaatttctcactttggcttgcttta-------tttgtataccaaggaagaaggtgagctccca |
209 |
Q |
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| T |
19392645 |
cttgagtagctccaaagcatatttagtttgattgacaaaatttctcactttggcttgctttatttgtagtttgtagaccaaggaagaaggtgagctcccc |
19392744 |
T |
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| Q |
210 |
catgagagacatttcgaactcacccggcatt |
240 |
Q |
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| T |
19392745 |
catgagagacatttcgaactcaccctgcatt |
19392775 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 28802458 - 28802623
Alignment:
| Q |
75 |
catgagagtggaaatagacttgcaatcttgcatatcaaacttcttgagtagctccaaagcatatttagtttgattgacaaaatttctcactttggcttgc |
174 |
Q |
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| T |
28802458 |
catgggagtggaaattgacttgcaatcttgcatgtgaaacttcttgagcagctccaaggcgtattttgtttggctatcaaacgttccctcttcggcttga |
28802557 |
T |
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| Q |
175 |
tttatttgtataccaaggaagaaggtgagctcccacatgagagacatttcgaactcacccggcatt |
240 |
Q |
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| T |
28802558 |
tttatttggagaccaagaaataaggcgagctcccccataaaagacatttcgaactcaccctgcatt |
28802623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 21388812 - 21388673
Alignment:
| Q |
91 |
gacttgcaatcttgcatatcaaacttcttgagtagctccaaagcatatttagtttgattgacaaaatttctcactttggcttgctttatttgtataccaa |
190 |
Q |
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| T |
21388812 |
gacttgcaatcttgcatatcaaacttctttagtagctcgagggcatatattgtttgacttataaagattctgtcacgggtttgctttatttgaagaccaa |
21388713 |
T |
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| Q |
191 |
ggaagaaggtgagctcccacatgagagacatttcgaactc |
230 |
Q |
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| T |
21388712 |
ggaagaaggtgagctcccccatgagagacatctcaaactc |
21388673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 11643245 - 11643186
Alignment:
| Q |
171 |
ttgctttatttgtataccaaggaagaaggtgagctcccacatgagagacatttcgaactc |
230 |
Q |
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| T |
11643245 |
ttgctttatttgaagaccaaggaagaagttgagctctcgcatgagagacatctcgcactc |
11643186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 20065871 - 20065983
Alignment:
| Q |
28 |
tcaacgtcgatgctaaattcatccttgtcgattgagagagctgatgccatgagagtggaaatagacttgcaatcttgcatatcaaacttcttgagtagct |
127 |
Q |
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| T |
20065871 |
tcaacgtcaatgccaaactcatccttgtcaattgaaagagccgaagccatgggagtggagatagacttgcaatcttgcacgttaaactttttgagcagct |
20065970 |
T |
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| Q |
128 |
ccaaagcatattt |
140 |
Q |
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| T |
20065971 |
ccaaggcgtattt |
20065983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 18579169 - 18579320
Alignment:
| Q |
83 |
tggaaatagacttgcaatcttgcatatcaaacttcttgagtagctccaaagcatatttagtttgattgacaaaatttctcactttggcttgctttatttg |
182 |
Q |
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| T |
18579169 |
tggagataaacttgcaatcttgcatgtcgaactttttgagcagctccaaggcgtattttgtttagctaacaaatgtcccttccttggcttactttattgg |
18579268 |
T |
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| Q |
183 |
tataccaaggaagaaggtgagctcccacatgagagacatttcgaactcaccc |
234 |
Q |
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| T |
18579269 |
gagcccaaggaagaaagtgagctcccccatgagagacatttctaactcaccc |
18579320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 23502337 - 23502396
Alignment:
| Q |
171 |
ttgctttatttgtataccaaggaagaaggtgagctcccacatgagagacatttcgaactc |
230 |
Q |
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| T |
23502337 |
ttgctttatttgaagaccaaggaagaaggtgagctctcccatgagagacatttcaaactc |
23502396 |
T |
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