View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_54 (Length: 239)
Name: NF9857_low_54
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27163400 - 27163178
Alignment:
| Q |
1 |
tgttatgcaaacattcaaaaattggaattatgttcactcagacaaactaacccatactatggtgaatgaaaccacaataaaagagtgaaggcatagaata |
100 |
Q |
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| T |
27163400 |
tgttatgcaaacattcaaaaattggaattatgttcactcagacaaactaacccatactatggtgaatgaaaccacaataaaagagtgaaggcatagaata |
27163301 |
T |
|
| Q |
101 |
acttctctcttaagatacgtctagtaatttggaaaatgcagggaatcacaatggaccaacgaaaatgatcaccgtatgctgcaatttctacacagaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27163300 |
acttctctcttaagatacgtctagtaatttggaaaatgcagggaatcacaatggaccaacgaaaatgatcaccgtatgctgcaatttctacacggaaaat |
27163201 |
T |
|
| Q |
201 |
acgaggaaattttgtgaacaaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
27163200 |
acgaggaaattttgtgaacaaat |
27163178 |
T |
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