View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_55 (Length: 238)

Name: NF9857_low_55
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_55
NF9857_low_55
[»] chr7 (5 HSPs)
chr7 (127-223)||(37961603-37961700)
chr7 (1-63)||(37961478-37961540)
chr7 (128-200)||(29772428-29772500)
chr7 (127-189)||(46205837-46205899)
chr7 (145-197)||(45900261-45900313)
[»] chr3 (5 HSPs)
chr3 (127-195)||(38360172-38360240)
chr3 (143-198)||(54383661-54383716)
chr3 (127-165)||(26813964-26814002)
chr3 (128-189)||(8913940-8914001)
chr3 (150-186)||(38360107-38360143)
[»] chr4 (3 HSPs)
chr4 (127-196)||(4641600-4641669)
chr4 (127-174)||(4734136-4734183)
chr4 (128-198)||(3684816-3684886)
[»] chr8 (3 HSPs)
chr8 (127-197)||(28321009-28321079)
chr8 (127-195)||(10335362-10335430)
chr8 (149-194)||(11796668-11796713)
[»] chr6 (2 HSPs)
chr6 (127-195)||(14113396-14113464)
chr6 (127-189)||(6266433-6266495)
[»] scaffold0227 (1 HSPs)
scaffold0227 (127-198)||(5040-5111)
[»] chr2 (2 HSPs)
chr2 (127-198)||(33425098-33425169)
chr2 (127-196)||(40611648-40611717)
[»] chr5 (2 HSPs)
chr5 (127-197)||(33699973-33700043)
chr5 (127-193)||(8317324-8317390)
[»] chr1 (5 HSPs)
chr1 (127-196)||(26028969-26029038)
chr1 (127-196)||(47030427-47030496)
chr1 (127-196)||(6797498-6797567)
chr1 (132-199)||(30057564-30057629)
chr1 (127-197)||(40428469-40428536)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 37961603 - 37961700
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactc-tttatgttattgtcaggcacatgctagt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  37961603 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataacacaactcttttatgttattgtcaggcacaagctagt 37961700  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37961478 - 37961540
Alignment:
Q  1 attcaatactcctagatcctgaatttttgtacatttatgttagaggaatgatatatgaacata 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37961478 attcaatactcctagatcctgaatttttgtacatttatgttagaggaacgatatatgaacata 37961540  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 29772428 - 29772500
Alignment:
Q  128 gtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactctttat 200  Q
    |||||||||||||| ||||| |||||||||||| |||| ||||| || | |||||||||||| ||||||||||    
T  29772428 gtgctcctcacaatatcaaaagttgttgcataagttgttcaattctgattgtacatataacataactctttat 29772500  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 46205899 - 46205837
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataaca 189  Q
    ||||||||||||||| | ||| | |||||||| | ||||||||||||||| ||||||||||||    
T  46205899 cgtgctcctcacaatattaaaaggtgttgcattagttgtccaattttggttgtacatataaca 46205837  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 45900313 - 45900261
Alignment:
Q  145 aaaggttgttgcataaattgtccaattttggtcgtacatataacacaactctt 197  Q
    ||||||||||| |||| ||||||||||||| |  || ||||||||||||||||    
T  45900313 aaaggttgttgtataagttgtccaattttgattatatatataacacaactctt 45900261  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 38360240 - 38360172
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38360240 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggttgtacatataacacaactc 38360172  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 54383716 - 54383661
Alignment:
Q  143 tcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactcttt 198  Q
    ||||||| |||||||| | |||| |||||||||| |||||||||||||||||||||    
T  54383716 tcaaaggatgttgcattagttgttcaattttggttgtacatataacacaactcttt 54383661  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 26814002 - 26813964
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgt 165  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26814002 cgtgcttctcacattgtcaaaggttgttgcataaattgt 26813964  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 8913940 - 8914001
Alignment:
Q  128 gtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataaca 189  Q
    |||||||||||||| | |||||||||||||| | |||| |||||||| | ||||| ||||||    
T  8913940 gtgctcctcacaatattaaaggttgttgcattagttgttcaattttgattgtacaaataaca 8914001  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 38360143 - 38360107
Alignment:
Q  150 ttgttgcataaattgtccaattttggtcgtacatata 186  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  38360143 ttgttgcataaattgtccaattttggttgtatatata 38360107  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 4641669 - 4641600
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactct 196  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  4641669 cgtgcttctcacaatgtcaaaggttgttgcataaattatccaattttggttgtacatattacacaactct 4641600  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 4734183 - 4734136
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttg 174  Q
    ||||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  4734183 cgtgctcctcacaatattaaaagttgttgcataaattgttcaattttg 4734136  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 3684816 - 3684886
Alignment:
Q  128 gtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactcttt 198  Q
    ||||||||||||| || ||||||||||||||  ||| ||||||||| |  |||||||||||| | ||||||    
T  3684816 gtgctcctcacaaagttaaaggttgttgcattgattatccaattttagatgtacatataacatagctcttt 3684886  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 28321079 - 28321009
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactctt 197  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||    
T  28321079 cgtgctcctcacaaagtcaaaggttgttgcataagttgtccaattttaattgtacatataacacaactctt 28321009  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 10335430 - 10335362
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactc 195  Q
    |||||| |||||| | ||||||  |||||||| | |||| |||||||||| ||||||||||||||||||    
T  10335430 cgtgcttctcacattatcaaagagtgttgcattagttgttcaattttggttgtacatataacacaactc 10335362  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 11796668 - 11796713
Alignment:
Q  149 gttgttgcataaattgtccaattttggtcgtacatataacacaact 194  Q
    |||||||||||| |||| |||||||||| ||||| |||||||||||    
T  11796668 gttgttgcataagttgtacaattttggttgtacaaataacacaact 11796713  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 14113396 - 14113464
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactc 195  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||  | ||||||||||||||||||    
T  14113396 cgtgctcctcacaatatcaaaggttgttgcataaattatccaattttaattgtacatataacacaactc 14113464  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 6266495 - 6266433
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataaca 189  Q
    ||||||||||||||| | ||||||||||| |||| |||| ||||||| || ||||| ||||||    
T  6266495 cgtgctcctcacaatattaaaggttgttgtataagttgttcaattttagttgtacaaataaca 6266433  T

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Target: scaffold0227 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 5111 - 5040
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactcttt 198  Q
    |||| |||| ||||| |||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  5111 cgtgttccttacaatatcaaagattgttgcataaattgtccaattttagttgtacatataacacaactcttt 5040  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 33425169 - 33425098
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactcttt 198  Q
    |||||| |||||||| |||||| ||||||||||| |||||||||||||   ||||||||||||||| |||||    
T  33425169 cgtgcttctcacaatatcaaagattgttgcataagttgtccaattttgaatgtacatataacacaattcttt 33425098  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 40611648 - 40611717
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactct 196  Q
    ||||||||||||| |||||||||||||||||||| |||| ||| | | || ||||| |||||||||||||    
T  40611648 cgtgctcctcacattgtcaaaggttgttgcataagttgtacaaatatcgttgtacaaataacacaactct 40611717  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 33700043 - 33699973
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactctt 197  Q
    |||||| |||||| | ||||||| |||||||| | |||| |||||||||| ||||||||||||||||||||    
T  33700043 cgtgcttctcacattatcaaagggtgttgcattagttgttcaattttggttgtacatataacacaactctt 33699973  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 8317390 - 8317324
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaac 193  Q
    ||||||||||||| |||||||| ||||||||||| || |  ||||||||| ||||| ||||||||||    
T  8317390 cgtgctcctcacattgtcaaagattgttgcataagttttataattttggttgtacaaataacacaac 8317324  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 26029038 - 26028969
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactct 196  Q
    ||||||||||||| |||||||| |||||| |||| |||| ||||||| || ||||| |||||||||||||    
T  26029038 cgtgctcctcacattgtcaaagattgttgtataagttgtacaattttagttgtacaaataacacaactct 26028969  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 47030496 - 47030427
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactct 196  Q
    |||||| |||||| | |||| ||||||||||| | |||| |||||||||| |||||||||| ||||||||    
T  47030496 cgtgcttctcacattatcaatggttgttgcattagttgttcaattttggttgtacatataaaacaactct 47030427  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 6797498 - 6797567
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactct 196  Q
    |||||| |||||| | | ||||| |||||||| | |||| ||||||| || |||||||||||||||||||    
T  6797498 cgtgcttctcacattattaaagggtgttgcattagttgttcaattttagttgtacatataacacaactct 6797567  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 30057629 - 30057564
Alignment:
Q  132 tcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactcttta 199  Q
    |||||||| ||||||| ||||||||||||   || |||||||||| ||||| |||||| |||||||||    
T  30057629 tcctcacattgtcaaaagttgttgcataa--ggtacaattttggttgtacaaataacataactcttta 30057564  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 40428536 - 40428469
Alignment:
Q  127 cgtgctcctcacaatgtcaaaggttgttgcataaattgtccaattttggtcgtacatataacacaactctt 197  Q
    |||||| |||||| |||||||||||||||   || |||| ||||||| || ||||| ||||||||||||||    
T  40428536 cgtgcttctcacattgtcaaaggttgttg---aagttgtacaattttagttgtacaaataacacaactctt 40428469  T

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