View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9857_low_57 (Length: 238)
Name: NF9857_low_57
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37166497 - 37166720
Alignment:
| Q |
1 |
atcttgcaatgatggtttgagtccgacgtagagtgaaaaactgaagagttatcttataaagtttgttcacatcagaaagagagtttgataaggtagtgct |
100 |
Q |
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| T |
37166497 |
atcttgcaatgatggtttgagtccgacgtagagtgaaaaactgaagagttatcttataaagtttgttcacatcagaaagagagtttgataaggtagtgct |
37166596 |
T |
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| Q |
101 |
aatttttggaaaaggatttacctcaagaaaaccatctaaacatgtttgatgattagttaaaacagcactaagcaatgtttgcaaatgattagcttgatta |
200 |
Q |
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| T |
37166597 |
aatttttggaaaaggatttacctcaggaaaaccatctaaacatgtttgatgattagttaaaacagcactaagcaatgtttgcaaatgattagcttgatta |
37166696 |
T |
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| Q |
201 |
ctactcattgtagtattggtttct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
37166697 |
ctactcattgtagtattggtttct |
37166720 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 44476449 - 44476501
Alignment:
| Q |
129 |
aaaccatctaaacatgtttgatgattagttaaaacagcactaagcaatgtttg |
181 |
Q |
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| T |
44476449 |
aaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttg |
44476501 |
T |
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