View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9857_low_63 (Length: 228)

Name: NF9857_low_63
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9857_low_63
NF9857_low_63
[»] chr5 (2 HSPs)
chr5 (6-228)||(29784047-29784269)
chr5 (94-156)||(5123469-5123531)
[»] chr7 (4 HSPs)
chr7 (94-156)||(28665198-28665260)
chr7 (94-156)||(31492211-31492273)
chr7 (94-156)||(29059913-29059975)
chr7 (94-155)||(45778972-45779033)
[»] chr4 (4 HSPs)
chr4 (101-156)||(35972458-35972513)
chr4 (94-156)||(31307037-31307099)
chr4 (94-156)||(46016257-46016319)
chr4 (94-158)||(45994630-45994694)
[»] chr8 (3 HSPs)
chr8 (94-156)||(2744041-2744103)
chr8 (94-163)||(39086860-39086929)
chr8 (94-156)||(4124995-4125057)
[»] chr3 (4 HSPs)
chr3 (94-156)||(8757452-8757514)
chr3 (93-155)||(39950319-39950381)
chr3 (94-156)||(25224807-25224869)
chr3 (96-156)||(20861358-20861418)
[»] chr1 (3 HSPs)
chr1 (94-160)||(36806719-36806785)
chr1 (101-156)||(22022235-22022290)
chr1 (94-148)||(42297421-42297475)
[»] chr6 (1 HSPs)
chr6 (94-162)||(15614538-15614606)
[»] chr2 (1 HSPs)
chr2 (94-146)||(993230-993282)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 29784047 - 29784269
Alignment:
Q  6 aaccaagacatccagtttcaagaagattgaagtccaaatccattcgtatacccattatccatgcaacaatcacacttaatggaacctgacaatgctcgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29784047 aaccaagacatccagtttcaagaagattgaagtccaaatccattcgtatacccattatccatgcaacaatcacacttaatggaacctgacaatgctcgag 29784146  T
Q  106 gaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaatatcaaagatatacatacaataaaagagtacattattgcaatttgcaat 205  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29784147 gaattaatctccacaattgcatgtggaggataccaaatttacaccaaaaaatatcaaagatatacatacaatagaagagtacattattgcaatttgcaat 29784246  T
Q  206 aacttagtcttaccacaaacata 228  Q
    |||||||||||||||||||||||    
T  29784247 aacttagtcttaccacaaacata 29784269  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 5123531 - 5123469
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  5123531 acaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacaccaaaaaa 5123469  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 28665198 - 28665260
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||| | |||||||||| ||||||||| ||||||    
T  28665198 acaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacacaaaaaaa 28665260  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 31492211 - 31492273
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  31492211 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31492273  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 29059913 - 29059975
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    |||||||| |||| |||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  29059913 acaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 29059975  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 45778972 - 45779033
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaa 155  Q
    ||||| ||||||| |||| |||||||||||||   |||||||||||  ||||||||||||||    
T  45778972 acaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacaccaaaaa 45779033  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 35972458 - 35972513
Alignment:
Q  101 tcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    |||||| |||| ||||||||||||| || |||||||||| ||||||||||||||||    
T  35972458 tcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaa 35972513  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 31307099 - 31307037
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  31307099 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31307037  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 46016257 - 46016319
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||| |||||| |||||| ||||||  ||||||||||||   ||||||||||||||    
T  46016257 acaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaa 46016319  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 45994630 - 45994694
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaata 158  Q
    ||||||||||||  |||| |||||||||||||| |   |||||||| |||||| |||||||||||    
T  45994630 acaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttataccaaaaaata 45994694  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 2744041 - 2744103
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  2744041 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 2744103  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 39086860 - 39086929
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaatatcaaa 163  Q
    ||||||||||||| |||| |||||||||||||| | ||||||||||  ||||||||| ||| | ||||||    
T  39086860 acaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacccaaataaatcaaa 39086929  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 4125057 - 4124995
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||   ||||||||||||||    
T  4125057 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaa 4124995  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 8757452 - 8757514
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||||| |||| |||||||||||||  | ||||||||||  |||||||||||||||    
T  8757452 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 8757514  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 39950319 - 39950381
Alignment:
Q  93 gacaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaa 155  Q
    |||||||||||| | |||| |||||||||||||||| |||||||||| | |||| ||||||||    
T  39950319 gacaatgctcgaaggattagtctccgcagttgcatgcggaggatacccaatttataccaaaaa 39950381  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 25224807 - 25224869
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||| ||| |||| |||||||||||||| | ||||||||||  ||||||||| |||||    
T  25224807 acaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaa 25224869  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 20861358 - 20861418
Alignment:
Q  96 aatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    ||||||||||| |||| ||||||||||||   | |||||||||| |||||| |||||||||    
T  20861358 aatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttataccaaaaaa 20861418  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 36806719 - 36806785
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaatatc 160  Q
    ||||||||||||| |||| |||| ||||||||| | ||||||||||  ||||||||| |||||||||    
T  36806719 acaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaatatc 36806785  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 22022235 - 22022290
Alignment:
Q  101 tcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaa 156  Q
    |||||| |||| |||||||||||||| |||||||||||| ||| ||||| ||||||    
T  22022235 tcgagggattagtctccgcagttgcacgtggaggatacccagtatacacaaaaaaa 22022290  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 42297475 - 42297421
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttaca 148  Q
    ||||||||||||| |||| |||||||||||||  | |||||||||| ||||||||    
T  42297475 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 15614606 - 15614538
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagtttacaccaaaaaatatcaa 162  Q
    ||||||||| |||||||| ||| | ||||||| ||||||||||||| ||||||||| | ||| ||||||    
T  15614606 acaatgctctaggaattagtcttcacagttgcgtgtggaggatacccagtttacacaacaaattatcaa 15614538  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 993230 - 993282
Alignment:
Q  94 acaatgctcgaggaattaatctccgcagttgcatgtggaggataccaagttta 146  Q
    ||||||||||| |||||||||||   ||||||||| |||||||||| ||||||    
T  993230 acaatgctcgaagaattaatctcgatagttgcatgcggaggatacccagttta 993282  T

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