View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9857_low_8 (Length: 554)
Name: NF9857_low_8
Description: NF9857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9857_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 538
Target Start/End: Original strand, 8161799 - 8162328
Alignment:
| Q |
9 |
agaagaataagatttgctaattctttttattatttcaaccccacactcttggtatttttctgtatctattcttgtaccctaagaacttactgtccgtttc |
108 |
Q |
| |
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|||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||||| |
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| T |
8161799 |
agaagaataagatttgctcattctttttcttccttcaaccccacactcttggtatttttcagtgtcaattcttgtaccctaagaacttactatccgtttc |
8161898 |
T |
|
| Q |
109 |
tttcctgacaaaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8161899 |
tttcctgacaaaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaatt |
8161998 |
T |
|
| Q |
209 |
ccatcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatctttttcggtaaaaatatcttacttta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8161999 |
ccatcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatcttttttggtaaaaatatcttacttta |
8162098 |
T |
|
| Q |
309 |
atttgttttcatgtttgtttatctttttattgtttggatcagttaccaaatgtaatgtggcttctgatgcattggatttgttgaacaaaaaagtgctgtt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8162099 |
atttgttttcatgtttgtttatctttttattgtttggattagttaccaaatgtaatgtggcttctgatgcattggatttgttggacaaaaaagtgctgtt |
8162198 |
T |
|
| Q |
409 |
tcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagtaagaa |
508 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8162199 |
tcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgctatcagtaagaa |
8162298 |
T |
|
| Q |
509 |
tttatttaactttacatttaaagtcattat |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
8162299 |
tttatttaactttacatttaaagtcattat |
8162328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 101 - 524
Target Start/End: Original strand, 7218174 - 7218598
Alignment:
| Q |
101 |
tccgtttctttcctgacaaaattgcaatgacccttttcattgacaaacc---atcattcccagaaggtctcaaggtccttgcaattgatcatgacatcac |
197 |
Q |
| |
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|||||| ||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
7218174 |
tccgttactttcttgacaaaattgcaatggcccttttcaccgacaaacctgcatcattcccagaaggtctcaaggttcttgcaattgatcatgacatcac |
7218273 |
T |
|
| Q |
198 |
tctccttaattccatcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatctttttcggtaaaaat |
297 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| || || | ||||||||| ||||||||| |
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|
| T |
7218274 |
tctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaaaaat |
7218373 |
T |
|
| Q |
298 |
atcttactttaatttgttttcatgtttgtttatctttttattgtttggatcagttaccaaatgtaatgtggcttctgatgcattggatttgttgaacaaa |
397 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| | |||||||| |||||||||||||||| ||||||||||||| || | ||||| | || |
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|
| T |
7218374 |
-tcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagcatggcttctgatgccttcaacatgttgga-aag |
7218471 |
T |
|
| Q |
398 |
aaagtgctgtttcgatgtaatgttgattgatgctcatatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgtt |
497 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||| ||||||||| | |||||||| |
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|
| T |
7218472 |
aaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtc |
7218571 |
T |
|
| Q |
498 |
atcagtaagaatttatttaactttaca |
524 |
Q |
| |
|
|| |||||||||||||| ||||||||| |
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|
| T |
7218572 |
attagtaagaatttattcaactttaca |
7218598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 347 - 537
Target Start/End: Original strand, 7243928 - 7244117
Alignment:
| Q |
347 |
tcagttaccaaatgtaatgtggcttctgatgcattggatttgttgaacaaaaaagtgctgtttcgatgtaatgttgattgatgctcatatgccaaacatg |
446 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| | |||||| | || |||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7243928 |
tcagttaccaaatgtaacacagcttctgatgccttgaacttgttgga-aagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatg |
7244026 |
T |
|
| Q |
447 |
gatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagtaagaatttatttaactttacatttaaagtcatta |
537 |
Q |
| |
|
||||| | ||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||| ||||||||| | ||| |||||| |
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|
| T |
7244027 |
gatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacactaaaattcatta |
7244117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 347 - 524
Target Start/End: Complemental strand, 7317641 - 7317465
Alignment:
| Q |
347 |
tcagttaccaaatgtaatgtggcttctgatgcattggatttgttgaacaaaaaagtgctgtttcgatgtaatgttgattgatgctcatatgccaaacatg |
446 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||| ||| | || | || |||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7317641 |
tcagttaccaaatgcaatacagcttctgatgccttgaattcgatgga-aagaaaggactgttttgatgtaatgttgattgatgctcatatgccaaacatg |
7317543 |
T |
|
| Q |
447 |
gatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagtaagaatttatttaactttaca |
524 |
Q |
| |
|
|||| | ||||||||||||||||||| |||||| ||| | |||||||| || ||||||||||| || ||||||||| |
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|
| T |
7317542 |
gatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttaca |
7317465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 347 - 535
Target Start/End: Complemental strand, 7324430 - 7324243
Alignment:
| Q |
347 |
tcagttaccaaatgtaatgtggcttctgatgcattggatttgttgaacaaaaaagtgctgtttcgatgtaatgttgattgatgctcatatgccaaacatg |
446 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||| | |||||| | || |||| ||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
7324430 |
tcagttaccaaatgcaattcagcttctgatgctttgtacttgttgga-aagaaaggactgttatgatgtaatgttgattgatgctcatatgccgaacatg |
7324332 |
T |
|
| Q |
447 |
gatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagtaagaatttatttaactttacatttaaagtcat |
535 |
Q |
| |
|
|||| || ||||||||||||| ||| | |||||||||| | ||||||||||| ||||||||||| || ||||||| || |||||||| |
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|
| T |
7324331 |
gatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatttcttcaactttaagttgaaagtcat |
7324243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 7243678 - 7243808
Alignment:
| Q |
119 |
aaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgagga |
218 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||||| | ||||||||||| |||| |||||||||||||||||| | ||||| | || ||||| |
|
|
| T |
7243678 |
aaattgcaatggcttttttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattgagga |
7243777 |
T |
|
| Q |
219 |
gatgtgtaatcgatgcaattatcaaggttag |
249 |
Q |
| |
|
||||||||||||| | |||||||||||||| |
|
|
| T |
7243778 |
tatgtgtaatcgattccattatcaaggttag |
7243808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 7317876 - 7317778
Alignment:
| Q |
134 |
ttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgtaatcgat |
232 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| || || || ||||||||||||||||||| |
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|
| T |
7317876 |
ttttcactgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctattgaggagatgtgtaatcgat |
7317778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 7324666 - 7324538
Alignment:
| Q |
126 |
aatgacccttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgt |
225 |
Q |
| |
|
|||| ||| |||| ||||||| ||||||||||| | ||||| | ||| |||| |||||||||||||||| | | ||||| | || ||||| |||||| |
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|
| T |
7324666 |
aatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgt |
7324567 |
T |
|
| Q |
226 |
aatcgatgcaattatcaaggttaggtact |
254 |
Q |
| |
|
||||||| |||||||||||||| |||| |
|
|
| T |
7324566 |
aatcgatatcattatcaaggttagttact |
7324538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 22766677 - 22766557
Alignment:
| Q |
134 |
ttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgtaatcgatg |
233 |
Q |
| |
|
||||||| ||||| ||||||||||| || |||||||| || |||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
22766677 |
ttttcatcgacaacccatcattccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgtgtaatcgatg |
22766578 |
T |
|
| Q |
234 |
caattatcaaggttaggtact |
254 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
22766577 |
tcattatcaaggttagttact |
22766557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 347 - 522
Target Start/End: Complemental strand, 22766469 - 22766295
Alignment:
| Q |
347 |
tcagttaccaaatgtaatgtggcttctgatgcattggatttgttgaacaaaaaagtgctgtttcgatgtaatgttgattgatgctcatatgccaaacatg |
446 |
Q |
| |
|
|||||||||||||| ||| |||||||| || ||| | |||||| | || |||| |||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
22766469 |
tcagttaccaaatgcaatacagcttctgaagccttgaacttgttgga-aagaaaggactgttttgatgtaatgttaattgatgctcatatgccaaacatg |
22766371 |
T |
|
| Q |
447 |
gatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgttatcagtaagaatttatttaacttta |
522 |
Q |
| |
|
||||||| ||| ||||| ||||||| | || ||||| | ||||||||||| |||||| |||| || ||||||| |
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|
| T |
22766370 |
gatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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