View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_10 (Length: 388)
Name: NF9858_low_10
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 48667344 - 48667694
Alignment:
| Q |
16 |
ttcatcaccaacataaaaatcacataatagggataacaatatcttgcataggaacccctnnnnnnntatatatcttgcaaaagaaaagaaccacagccat |
115 |
Q |
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| T |
48667344 |
ttcatcaccaacataaaaatcacataatagggataacaatatcttgcataggaacccctaaaaaaatatatatcttgcaaaagaaaagaaccacagccat |
48667443 |
T |
|
| Q |
116 |
aaggggttcatgtatgaattttagacacctgacaaaccgagcaacattcgggaacagagaacaaggccgacataacacatgagagatcttcttagaattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48667444 |
aaggggttcatgtatgaattttagacacctgacaaaccgagcaacattcgggaacagagaacaaggccgacataacacatgagagatcttcttagaattc |
48667543 |
T |
|
| Q |
216 |
ttagatagaagacatgtgaatggagctttccttcccaagtctgatagagttgacataatctgtgggacaatgagccgaaaaaccaggaagtgccagtcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48667544 |
ttagatagaagacatgtgaatggagctttccttcccaagtctgatagagttgacataatctgtgggacaatgagccgaaaaaccaggaagtgccagtcca |
48667643 |
T |
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| Q |
316 |
attattcttaccagtatgcgaaaccacccttccttatactctgctccttca |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48667644 |
attattcttaccagtatgcgaaaccacccttccttatactctgctccttca |
48667694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 8600229 - 8600339
Alignment:
| Q |
254 |
gtctgatagagttgacataatctgtgggacaatgagccgaaaaaccaggaagtgccagtccaattattcttaccagtatgcgaaaccacccttccttata |
353 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||| |
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| T |
8600229 |
gtctgataaagttgacataatctgtgggacaatgagccgaaaaaccaggaagtaacagtcctattatccttaccaatatgcgaaaccacccttccttata |
8600328 |
T |
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| Q |
354 |
ctctgctcctt |
364 |
Q |
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| T |
8600329 |
ctctgctcctt |
8600339 |
T |
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