View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_11 (Length: 356)
Name: NF9858_low_11
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 49350661 - 49350319
Alignment:
| Q |
1 |
gtgaatatttttgtaacaacactaaaattttttagcactgaagattagttaccaaagcaaattcatgaactgtttagggttatatttttatacagagaat |
100 |
Q |
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| T |
49350661 |
gtgaatatttttgtaacaacactaaaaaaatttagcactgaagattagttaccagagcaaattcatgaactgtttagggttatatttttatacagagaat |
49350562 |
T |
|
| Q |
101 |
gaagtcaagtaaattactctaatataaaattaaacattaatgga-ttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaa |
199 |
Q |
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| T |
49350561 |
gaagtcaagtaaattactctaatataaaattaaacattaatggagttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaa |
49350462 |
T |
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| Q |
200 |
tgaccatttacaaaatcaacccaacatccttcatgaaccataaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcc |
299 |
Q |
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| T |
49350461 |
tgaccatttacaaaatcaacccaacatccttcatgaaccataaaggatgcagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcc |
49350362 |
T |
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| Q |
300 |
caaattcactcatctttagttcaatcagatacttgtgtgtttt |
342 |
Q |
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| T |
49350361 |
caaattcactcatctttagttcaatcagatacttgtgtgtttt |
49350319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
241 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
336 |
Q |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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