View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_12 (Length: 355)
Name: NF9858_low_12
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 23360315 - 23360637
Alignment:
| Q |
6 |
ataatttagatgttaatcaagtttaaatagctggttaattattttagtggtttattaatgaatggaaaaagttgtcacagctcaataatgatcaacataa |
105 |
Q |
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| T |
23360315 |
ataatttagatgttaatcaagtttaaatagctggttaattattttagtggatgattaaagaatggaaaaagctgtcacagctcaataatgatcaacagaa |
23360414 |
T |
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| Q |
106 |
tgctattaactannnnnnnnnn----atgttcaaatgaacattatatctgtgaaaaatcaaaattgtattaaattacagtacatgatattcattaaccat |
201 |
Q |
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| T |
23360415 |
tgctattaactatttattttttttatatgttcaaatgaacattatatctgtgaaaaatcaaaattgtattaaattacagtacatgatattcattaaccat |
23360514 |
T |
|
| Q |
202 |
gatttgtgttcaaatttacatttgaaaattgtggttgtgttcagttcagtgttgttcatggccggccatctttcacgaaattggccacatcgaaaaccca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23360515 |
gatttgtgttcaaatttacatttgaaaattgtggttgtgttcagttcagtgttgttcatggccggccatctttcacgaaattggccacatcgaaaaccca |
23360614 |
T |
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| Q |
302 |
aaaagccaccactgatatatgtg |
324 |
Q |
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| T |
23360615 |
aaaagccaccacttatatatgtg |
23360637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 4364431 - 4364385
Alignment:
| Q |
191 |
tcattaaccatgatttgtgttcaaatttacatttgaaaattgtggtt |
237 |
Q |
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| T |
4364431 |
tcattaaccacgatttgtgttcaaatatacacttgaaaaatgtggtt |
4364385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25202801 - 25202851
Alignment:
| Q |
187 |
atattcattaaccatgatttgtgttcaaatttacatttgaaaattgtggtt |
237 |
Q |
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| T |
25202801 |
atattcatgaaccatgatttatgttcaaatttacacacgaaaattgtggtt |
25202851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 7757520 - 7757569
Alignment:
| Q |
181 |
tacatgatattcattaaccatgatttgtgttcaaatttacatttgaaaat |
230 |
Q |
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| T |
7757520 |
tacatgatattcattaactacgatttgtgttcaaatatacacttaaaaat |
7757569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 43432531 - 43432475
Alignment:
| Q |
181 |
tacatgatattcattaaccatgatttgtgttcaaatttacatttgaaaattgtggtt |
237 |
Q |
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|||||||||||||||||||| ||| | ||||||||| |||| |||||| ||||||| |
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| T |
43432531 |
tacatgatattcattaaccacgatgtatgttcaaatatacacttgaaagctgtggtt |
43432475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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