View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_13 (Length: 346)
Name: NF9858_low_13
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 36903182 - 36902854
Alignment:
| Q |
1 |
gcgaagcaaagaggaagacattgaatgcaggattgccttctaatactggtctaccctcagttgttccgccaggtactgcacttgttgtggtgaaggaagc |
100 |
Q |
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| T |
36903182 |
gcgaagcaaagaggaagacattgaatgcaggattgccttctaatactggtctaccctcagttgttccgccaggtactgcacttgttgtggtgaaggaagc |
36903083 |
T |
|
| Q |
101 |
accagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36903082 |
accagcgacaagcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagata |
36902983 |
T |
|
| Q |
201 |
ttttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggtgggnnnnnnngcaaatggat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36902982 |
ttttcagctgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggtgggaaaaaaagcaaatggat |
36902883 |
T |
|
| Q |
301 |
caacatatacaaacatgttcatttgaaag |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
36902882 |
caacatatacaaacatgttcatttgaaag |
36902854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 36893366 - 36893103
Alignment:
| Q |
15 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
111 |
Q |
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| T |
36893366 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
36893267 |
T |
|
| Q |
112 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
211 |
Q |
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| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
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| T |
36893266 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
36893167 |
T |
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| Q |
212 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
275 |
Q |
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|||||| || ||||| || | ||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
36893166 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
36893103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 36883166 - 36883095
Alignment:
| Q |
209 |
tgttttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctccgaggt |
280 |
Q |
| |
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||||||||| |||||||||||| | || | ||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
36883166 |
tgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaaggt |
36883095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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