View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_14 (Length: 334)
Name: NF9858_low_14
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 27445665 - 27445973
Alignment:
| Q |
19 |
ccaccatgtctacaaattccaagagctgatgttctggttgtttaacgataatttgacgtagctatgtgatatgttttgagcttgtctgctagaagagtgg |
118 |
Q |
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| T |
27445665 |
ccaccatgtctacaaattccaagagctgatgttctggttgtttaacgatagtttgacgtagctatgtgatatgttttgagcttgtctgctagaagagtgg |
27445764 |
T |
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| Q |
119 |
gattattagcatatcggttggcctgagttttcaagtctgaagtaa-tcctggatataattagataatcatgaaacaataccatgtgacatctcattggcc |
217 |
Q |
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| T |
27445765 |
gattattagcatatcggttggcctgagttttcaagtctgaagtaaatcctggatataattagacaatcatgaaacaataccatgtgacatctcattggcc |
27445864 |
T |
|
| Q |
218 |
tttctctcttatgaaataatagcccaaaacacaaccacagaatccatcaaggaattgtttccacaaaaacttgtagatctatctatatatactcatgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27445865 |
tttctctcttatgaaataatagcccaaaacacaaccacagaatccatcaaggaattgtttccacaaaaacttgtagatctatctatatatactcattatg |
27445964 |
T |
|
| Q |
318 |
tccatctca |
326 |
Q |
| |
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| |||||| |
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| T |
27445965 |
actatctca |
27445973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 27559734 - 27559621
Alignment:
| Q |
135 |
gttggcctgagttttcaagtctgaagtaatcctggatataattagataatcatgaaacaa-taccatgtgacatctcattggcctttctctcttatgaaa |
233 |
Q |
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|||||| |||||||| ||||||||||||| ||| ||||||||| | || ||||||| || ||||||||||| ||||||||||| || |||||||| ||| |
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| T |
27559734 |
gttggcatgagtttttaagtctgaagtaaccctttatataattaaaaaaccatgaaaaaaataccatgtgacctctcattggcccttatctcttatcaaa |
27559635 |
T |
|
| Q |
234 |
taatagcccaaaac |
247 |
Q |
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| T |
27559634 |
taatagcccaaaac |
27559621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 282
Target Start/End: Original strand, 10397371 - 10397517
Alignment:
| Q |
136 |
ttggcctgagttttcaagtctgaagtaatcctggatataattagataatcatgaaacaataccatgtgacatctcattggcctttctctcttatgaaata |
235 |
Q |
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||||| |||||||| |||||| |||||| | |||||||||| | |||||| ||| ||||||| |||| ||||||||||| || |||||||| ||||| |
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| T |
10397371 |
ttggcatgagttttatagtctgccgtaatcgttgatataattaaacaatcattaaataataccacatgacttctcattggcccttatctcttatcaaata |
10397470 |
T |
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| Q |
236 |
atagcccaaaacacaaccacagaatccatcaaggaattgtttccaca |
282 |
Q |
| |
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|||||| |||||||||||| ||| || || |||||||||||||| |
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| T |
10397471 |
atagccagcaacacaaccacacaattcagcagagaattgtttccaca |
10397517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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