View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_15 (Length: 331)
Name: NF9858_low_15
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 982956 - 983257
Alignment:
| Q |
20 |
ttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtg |
119 |
Q |
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| T |
982956 |
ttgtgttcactgattgagattgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatg |
983055 |
T |
|
| Q |
120 |
aactgaactgctatggtaaattaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacatttgctacaaaataaagtatataggtat |
219 |
Q |
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| T |
983056 |
aactgaactgctatggtaaattaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacatttgctacaaaataaagtatataggtat |
983155 |
T |
|
| Q |
220 |
tttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaatttccta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
983156 |
tttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagtatcttgtgtcttggtcatgcattcaaatttccta |
983255 |
T |
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| Q |
320 |
tg |
321 |
Q |
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|| |
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| T |
983256 |
tg |
983257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
216 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
315 |
Q |
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| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
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| Q |
316 |
cctatgct |
323 |
Q |
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||| |||| |
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| T |
40413324 |
cctttgct |
40413331 |
T |
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