View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_16 (Length: 330)
Name: NF9858_low_16
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 38806484 - 38806798
Alignment:
| Q |
4 |
aatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacataagcttttctatcacttgcagaatccaatgagaaggatcttctgat |
103 |
Q |
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| T |
38806484 |
aatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacataagcttttctatcacttgcagaatccaatgagaaggatcttctgat |
38806583 |
T |
|
| Q |
104 |
aggctgaattgaaaactgatcatcnnnnnnnctaacatcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcactgcc |
203 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38806584 |
aggctgaattgaaaactgatcatctttttttctaacatcaatacactcatcatccattatggtaccatggtggcacttccatggtttcaactgcactgcc |
38806683 |
T |
|
| Q |
204 |
ttcttctcctcctccgtcctcctagttgtagagtgagttctactcagcgtttctagtctttcccttgactcatttcgctcttgctgaacctgagaccgtg |
303 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38806684 |
ttcttcttctcctccgttttcctagttgtagagtgagttctactcagcgtttctagtctttcccttgactcatttcgatcttgctgaacctgagaccgtg |
38806783 |
T |
|
| Q |
304 |
atccccgattctctc |
318 |
Q |
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||||||||||||||| |
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| T |
38806784 |
atccccgattctctc |
38806798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 35382149 - 35382002
Alignment:
| Q |
138 |
acatcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcactgccttcttctcctcctccgtcctcctagttgtagagt |
237 |
Q |
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|||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||| ||||| |
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| T |
35382149 |
acatcaatacactcatcacccattatggaaccacggtggcacttccatggtttcaactgcaccaccttcatctcctcctccatcttcctagttgaagagt |
35382050 |
T |
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| Q |
238 |
gagttctactcagcgtttctagtctttcccttgactcatttcgctctt |
285 |
Q |
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| T |
35382049 |
gagttgtactcattgattttagtctttcccttgactcattttgctctt |
35382002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 35382199 - 35382146
Alignment:
| Q |
4 |
aatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacat |
57 |
Q |
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||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||| |
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| T |
35382199 |
aatcctcattttgattcctattattatgttggatgatgtcttgaacatccacat |
35382146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 39871218 - 39871071
Alignment:
| Q |
138 |
acatcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcactgccttcttctcctcctccgtcctcctagttgtagagt |
237 |
Q |
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|||||||||||||||||| ||||||||| |||| | |||||||| |||| |||||||||||| ||||| | |||| ||||||| ||||||||| ||||| |
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| T |
39871218 |
acatcaatacactcatcacccattatggaaccacgatggcactttcatggtttcaactgcaccaccttcatttccttctccgtcttcctagttgaagagt |
39871119 |
T |
|
| Q |
238 |
gagttctactcagcgtttctagtctttcccttgactcatttcgctctt |
285 |
Q |
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||||| |||||| | ||||||||||||||||||||||||| |||||| |
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| T |
39871118 |
gagttttactcattgattctagtctttcccttgactcattttgctctt |
39871071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 3026588 - 3026442
Alignment:
| Q |
139 |
catcaatacactcatcatccattatggtaccatggtggcacttccatgttttcaactgcactgccttcttctcctcctccgtcctcctagttgtagagtg |
238 |
Q |
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||||||||||||||||| |||| |||| |||| ||||||||||||||| |||||||||||| ||||| | |||| ||||||| ||||||||| |||||| |
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| T |
3026588 |
catcaatacactcatcacccatcatggaaccacggtggcacttccatggtttcaactgcaccaccttcatttccttctccgtcttcctagttgaagagtg |
3026489 |
T |
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| Q |
239 |
agttctactcagcgtttctagtctttcccttgactcatttcgctctt |
285 |
Q |
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|||| |||||| | ||||||| ||||||||||||||||| |||||| |
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| T |
3026488 |
agttgtactcattgattctagtatttcccttgactcattttgctctt |
3026442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 39871268 - 39871215
Alignment:
| Q |
4 |
aatcctcattttgatgcctattattctgttggatgatgtgttgaacatctacat |
57 |
Q |
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||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||| |
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| T |
39871268 |
aatcctcattttgattcctattattatgttggatgatgtcttgaacatccacat |
39871215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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