View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_17 (Length: 323)
Name: NF9858_low_17
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 444173 - 443850
Alignment:
| Q |
1 |
aagtgtagggtagaaaggggcaacaagtgtgaggaacatggccctctcagccaggtcttcagcgacagttggatcagaagcaacagttgttaggtcagaa |
100 |
Q |
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| T |
444173 |
aagtgtagggtaggaaggggcaacaagtgtgaggaacatggccctctcagccaggtcttcagcgacagttggatcagaagcaacagttgttaggtcagaa |
444074 |
T |
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| Q |
101 |
tcgatgattccgttgatggaaatgaagttcatggccgcttgttgaaatagttggagggaggaattgaattgagagtgaataagaagaacctccaatatgt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
444073 |
tcgatgattccgttgacggaaatgaagttcatggccgcttgttgaaatagttggagggaggaattgaattgagagtgaataaggagaacctccaatatgt |
443974 |
T |
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| Q |
201 |
agccttttgggtcgcgttcaactttggattggagtgtttgaaggtttagcttctccgacctcccacccaaagcctccgccaccggtagtttgccg-cgca |
299 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
443973 |
agcctattgggtcgcgttcaactttggattggagtgtttgaaggtttagcttctccgacctcccacccaaagcctccgccaccattagtttgccgtcgca |
443874 |
T |
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| Q |
300 |
tgacatgaaattggttgagcttag |
323 |
Q |
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|||||||||||||||||||||||| |
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| T |
443873 |
tgacatgaaattggttgagcttag |
443850 |
T |
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