View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_18 (Length: 318)
Name: NF9858_low_18
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 25209451 - 25209166
Alignment:
| Q |
19 |
tctatatatattgaagtatagtttgcaacactttgtgatcttagaaagcttgatgaacaaaaatttcttagtaacttagatcattgtcaatatataatca |
118 |
Q |
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| T |
25209451 |
tctatatatattgaagtatagtttacaacactttgtgatcttagaaagcttgatgaacaaaaatttcttagtaacttagatcattgtcaa--tataatca |
25209354 |
T |
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| Q |
119 |
tcattgtgctttttcttagtttaaaaaggtattttaaatcgatccaaacttgttatttcaaagnnnnnnnnnnnnnnnnaatgttgatttagttgctaac |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
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| T |
25209353 |
tcattgtgctttttctttgtttaaaaaggtattttaaatcgatccaaacttgttatttcaaa-tatttttttttttttaaatgttgatttaggtgttaac |
25209255 |
T |
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| Q |
219 |
ataaattatgttcttaaatttgatgcagttaggagttcaggaatgcagtggtcattttcaaataaggtttcaaaccttcctcaattcat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25209254 |
ataaattatgttcttaaatttgatgcagttaggagttcaggaatgcagtggtcattttcaaataaggtttcaaaccttcctcaattcat |
25209166 |
T |
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