View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9858_low_19 (Length: 317)

Name: NF9858_low_19
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9858_low_19
NF9858_low_19
[»] chr6 (30 HSPs)
chr6 (14-309)||(24933878-24934173)
chr6 (14-309)||(24941411-24941706)
chr6 (20-317)||(21161110-21161407)
chr6 (26-309)||(24739688-24739971)
chr6 (14-299)||(30153708-30153996)
chr6 (14-291)||(29950408-29950685)
chr6 (14-291)||(30148738-30149015)
chr6 (97-299)||(29954124-29954326)
chr6 (20-180)||(30131922-30132082)
chr6 (74-286)||(30134435-30134647)
chr6 (26-299)||(15727671-15727944)
chr6 (59-159)||(30578413-30578513)
chr6 (14-84)||(30040417-30040487)
chr6 (224-298)||(16702522-16702596)
chr6 (209-299)||(24711544-24711634)
chr6 (209-298)||(31000442-31000531)
chr6 (209-309)||(24272440-24272540)
chr6 (101-283)||(28927501-28927683)
chr6 (101-156)||(29876123-29876178)
chr6 (242-309)||(30578261-30578328)
chr6 (101-159)||(29084316-29084374)
chr6 (209-315)||(29115667-29115773)
chr6 (209-299)||(29834621-29834711)
chr6 (209-299)||(29866055-29866145)
chr6 (209-299)||(29897488-29897578)
chr6 (209-299)||(29928679-29928769)
chr6 (102-159)||(29098642-29098699)
chr6 (102-159)||(29115560-29115617)
chr6 (102-159)||(29211721-29211778)
chr6 (188-309)||(29886682-29886803)
[»] chr4 (1 HSPs)
chr4 (125-309)||(44263086-44263270)
[»] scaffold0110 (1 HSPs)
scaffold0110 (14-308)||(44363-44657)
[»] scaffold0014 (3 HSPs)
scaffold0014 (101-309)||(136672-136880)
scaffold0014 (224-286)||(105254-105316)
scaffold0014 (215-309)||(139710-139804)
[»] chr3 (5 HSPs)
chr3 (20-136)||(24225922-24226038)
chr3 (26-287)||(11990535-11990796)
chr3 (218-298)||(16350465-16350545)
chr3 (209-299)||(24219738-24219828)
chr3 (198-309)||(24226068-24226179)
[»] scaffold0177 (1 HSPs)
scaffold0177 (101-184)||(26652-26735)
[»] scaffold1840 (2 HSPs)
scaffold1840 (217-299)||(823-905)
scaffold1840 (101-153)||(707-759)
[»] scaffold0572 (2 HSPs)
scaffold0572 (217-299)||(2645-2727)
scaffold0572 (101-153)||(2529-2581)
[»] chr1 (4 HSPs)
chr1 (11-160)||(10129345-10129494)
chr1 (224-309)||(10129558-10129643)
chr1 (209-287)||(41315675-41315753)
chr1 (206-286)||(19489653-19489733)
[»] chr7 (1 HSPs)
chr7 (14-162)||(3642248-3642396)
[»] scaffold0308 (1 HSPs)
scaffold0308 (101-162)||(8293-8354)
[»] scaffold0019 (1 HSPs)
scaffold0019 (101-162)||(126763-126824)
[»] scaffold0054 (1 HSPs)
scaffold0054 (209-315)||(54188-54294)
[»] chr2 (2 HSPs)
chr2 (81-134)||(15063544-15063597)
chr2 (221-309)||(15063369-15063457)
[»] scaffold0237 (1 HSPs)
scaffold0237 (209-309)||(21749-21849)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 24933878 - 24934173
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24933878 atcaaaggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 24933977  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||  ||||||||    
T  24933978 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaaaattgatgggctgttggttcagcctaatgtagtcatgta 24934077  T
Q  214 caatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24934078 caatacaattattgatagtttgtgcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 24934173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 24941411 - 24941706
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  24941411 atcaaaggtctatgtcttaatggcaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcatcttaatcaagttagttatggga 24941510  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | || |||  ||||||||    
T  24941511 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaagaattgatgggctgttggttcagcctaatgtagtcatgta 24941610  T
Q  214 caatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24941611 caatacaattattgatagtttgtgcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 24941706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 21161407 - 21161110
Alignment:
Q  20 ggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttga 119  Q
    ||||| |||||||||||||| |||| |||||| ||| |||||||||| ||||| |||||||||| |||||| ||| |||| |||||||||||||||||||    
T  21161407 ggtctttgtcttaatggtaaagttaaggaagctctttactttcatgatgatgttatagcaaaggagtttcaacttaatcaagttagttatgggaccttga 21161308  T
Q  120 tcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgtacaatac 219  Q
    |  |||| ||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | || |||  |||||||||| |||    
T  21161307 ttgatgggttatgcaaagcaggagaaacaagagctgccatgcaggttcttagaaatattgatgggctgttggttcagcctaatgtggtcatgtacagtac 21161208  T
Q  220 aattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgtggttacct 317  Q
    ||||||| ||||||| |||||||||||||||||||||||||| | |||||||| |||||||||| |||  | |||||| |||||  ||||||||||||    
T  21161207 aattatttatagtttatgcaaggataaacttgtaattgatgcttttgatttatattctgaaatggttgccatgagaatatttcctaatgtggttacct 21161110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 309
Target Start/End: Complemental strand, 24739971 - 24739688
Alignment:
Q  26 tgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttgatcaatg 125  Q
    ||||||||||  || |||| |||| |||||||||||||||| ||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||  |||    
T  24739971 tgtcttaatgacaaagttaaggaaacccttcactttcatgatgatgttatagcaaaggggtttcaacttaatcaagttagttatgggaccttgattgatg 24739872  T
Q  126 gattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgtacaatacaattat 225  Q
    | ||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | || |||  |||||||||| |||||||||    
T  24739871 ggttatgcaaagcaggagaaacaagagctgccatgcaggttcttagaaatattgatgggctgttggttcagcctaatgtggtcatgtacagtacaattat 24739772  T
Q  226 tgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    | ||||||| |||||||||||||||||||||||||| | |||||||| |||| ||||| || | |||||||||| ||| |||||    
T  24739771 ttatagtttatgcaaggataaacttgtaattgatgcttttgatttatattctcaaatgcttctcaagagaatttctcctgatgt 24739688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 30153708 - 30153996
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||| ||||| |||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||||| ||| | ||| |  |||||||||||||||    
T  30153708 atcaaaggtctttgtcttaatggtgaggttaggaaagccctttactttcataacgatgttatagcaaagggattttatcttaacgaggttagttatggga 30153807  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatggg---ctgttggttcggtctgatgccgtcat 210  Q
    | |||||||| || ||||||||| | |||||||||||||||||||||||| | |||||||||||||| |||    | |||||| |  |||||| | | ||    
T  30153808 cattgatcaacgggttatgtaaatccggagaaacaagagctgccctgcagttgcttagaaagattgaagggttattattggttagacctgatgtcataat 30153907  T
Q  211 gtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    ||||| | |||| ||||||||||| || ||||||||||| |||||||| || | |||||||| |||||||||||||||||||| |||||    
T  30153908 gtacactgcaatcattgatagtttctgtaaggataaactcgtaattgacgcgtatgatttatattctgaaatgattgttaagaaaattt 30153996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 29950685 - 29950408
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||| ||||| |||||||||||| |  ||||| |||| ||| ||||||||||  |||| |||||||| || ||||| ||| |||| |||||||||||||    
T  29950685 atcaacggtctttgtcttaatggtcaaattaggaaagcactttactttcatgatcatgttatagcaaaaggatttcatcttaatcatgttagttatggga 29950586  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgta 213  Q
     ||||||||| || ||||||||| | |||||||||| ||||||||| ||| | |||  ||||||| | ||| ||||||||  | |||||| ||| |||||    
T  29950585 tcttgatcaacgggttatgtaaatccggagaaacaaaagctgccctacagttgcttgaaaagattaaagggttgttggttaagcctgatgtcgttatgta 29950486  T
Q  214 caatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaa 291  Q
    ||| ||||| |||||   | | || || ||||| ||||| | |||||  | |||||||| ||||||||||||||||||    
T  29950485 caacacaatcattgacgctctctgtaaagataagcttgttagtgatgggtatgatttatattctgaaatgattgttaa 29950408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 30148738 - 30149015
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||| ||||| |||||||||||| |  ||||| |||| ||| ||||||||||  |||| |||||||| || ||||| ||| |||| |||||||||||||    
T  30148738 atcaacggtctttgtcttaatggtcaaattaggaaagcactttactttcatgatcatgttatagcaaaaggatttcatcttaatcatgttagttatggga 30148837  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgta 213  Q
     ||||||||| || ||||||||| | |||||||||| ||||||||| ||| | |||  ||||||| | ||| | ||||||  | |||||| ||| |||||    
T  30148838 tcttgatcaacgggttatgtaaatccggagaaacaaaagctgccctacagttgcttgaaaagattaaagggtttttggttaagcctgatgtcgttatgta 30148937  T
Q  214 caatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaa 291  Q
    ||| ||||| |||||   | | || || ||||| ||||| | |||||  | |||||||| ||||||||||||||||||    
T  30148938 caacacaatcattgactttctctgtaaagataagcttgttagtgatgggtatgatttatattctgaaatgattgttaa 30149015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 299
Target Start/End: Complemental strand, 29954326 - 29954124
Alignment:
Q  97 tcaggttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcgg 196  Q
    ||||||||||||||| ||| |||| || || |||||||||| ||||||||| ||||||||| || ||||||||||||||||||| ||| || | |||  |    
T  29954326 tcaggttagttatggtaccctgataaacgggttatgtaaaataggagaaactagagctgccttgtaggttcttagaaagattgaagggttgctcgttaag 29954227  T
Q  197 tctgatgccgtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaa 296  Q
     || |||  || ||||||   ||||| ||||||||| | || || ||||| || |||| |||||| | |||||||| ||||||||||||||| |||| ||    
T  29954226 cctaatgtggtaatgtactccacaatcattgatagtctttgtaaagataagctcgtaagtgatgcgtatgatttatattctgaaatgattgtcaagaaaa 29954127  T
Q  297 ttt 299  Q
    |||    
T  29954126 ttt 29954124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 30131922 - 30132082
Alignment:
Q  20 ggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttga 119  Q
    ||||| ||||||| |||| |||||||| ||||  | |||||||| || ||||| |||| |||||| ||| |  | ||||| ||||||||||| ||| | |    
T  30131922 ggtctctgtcttagtggtcaggttaggaaagcattgcactttcacgatgatgttatagaaaagggatttaaattggatcatgttagttatggaaccctta 30132021  T
Q  120 tcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattga 180  Q
    |||| || ||||||||| | ||||||||||||||||||||||||||||||  |||||||||    
T  30132022 tcaacgggttatgtaaatcgggagaaacaagagctgccctgcaggttcttgaaaagattga 30132082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 286
Target Start/End: Original strand, 30134435 - 30134647
Alignment:
Q  74 atagcaaaggggtttcaccttgatcaggttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaa 173  Q
    ||||| ||||| ||| | || ||||| ||||||||| | ||| ||||||| |  || |||||||| |||||||||||||||||||||||||||||| |||    
T  30134435 atagctaagggatttaaactggatcatgttagttatagaaccctgatcaacgagttgtgtaaaacgggagaaacaagagctgccctgcaggttcttcgaa 30134534  T
Q  174 agattgatgggctgttggttcggtctgatgccgtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatg 273  Q
    |||||||  || |  | |||  | || |||   |||||||||  ||||| ||||||||| | || || ||||| || ||||||||||| | ||||||||     
T  30134535 agattgaaaggattcttgttaagcctaatgtgctcatgtacaccacaatcattgatagtctttgtaaagataagctcgtaattgatgcttatgatttata 30134634  T
Q  274 ttctgaaatgatt 286  Q
    |||||||||||||    
T  30134635 ttctgaaatgatt 30134647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 15727944 - 15727671
Alignment:
Q  26 tgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttgatcaatg 125  Q
    ||||||||||||||||||| |||| | || |||||||||||| ||||  | |||   || |||||  | ||||| |||| |||||| |||||||||||||    
T  15727944 tgtcttaatggtaaggttaaggaatctctacactttcatgaccatgtgcttgcacttggatttcaattggatcatgttacttatggtaccttgatcaatg 15727845  T
Q  126 gattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgtacaatacaattat 225  Q
    | || |||||||  || ||||||| ||||||| |||   |  | ||||||||||| |||   |||||   ||| ||||  || ||| ||||||| || ||    
T  15727844 ggttgtgtaaaattggggaaacaaaagctgccttgctaatgttgagaaagattgaagggagattggtcgagtccgatgtggtaatgcacaatacgatcat 15727745  T
Q  226 tgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    |||||||||||| ||  ||||| |||||| |||||||| ||| |||| |||||||||||||   ||||||||||    
T  15727744 tgatagtttgtgtaaacataaatttgtaactgatgcctatgagttatattctgaaatgattacaaagagaattt 15727671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 30578513 - 30578413
Alignment:
Q  59 tttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccc 158  Q
    |||||||||||||| ||||| ||||||||||  |||||| | ||||||||||| || |||||||| || ||||||||  | |||||||||| ||||||||    
T  30578513 tttcatgacgatgttatagctaaggggtttcgtcttgataatgttagttatggaacgttgatcaacgggttatgtaagtccggagaaacaaaagctgccc 30578414  T
Q  159 t 159  Q
    |    
T  30578413 t 30578413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 30040417 - 30040487
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggg 84  Q
    ||||| ||||| |||||||||||| |||||||| |||||||| |||||||| ||||||| |||||||||||    
T  30040417 atcaaaggtctttgtcttaatggtgaggttaggaaagccctttactttcataacgatgttatagcaaaggg 30040487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 16702596 - 16702522
Alignment:
Q  224 attgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatt 298  Q
    |||||| ||||||| || |||||||| ||||||||||||| || ||||| ||| ||||||||||| |||||||||    
T  16702596 attgatggtttgtgtaaagataaactagtaattgatgcctatggtttatattcagaaatgattgtaaagagaatt 16702522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 24711544 - 24711634
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    |||||||  ||||||||||||||||| |||||  |||||||||| | |||||| | |||||||| ||||||||||  || |||||||||||    
T  24711544 atgtacaccacaattattgatagtttatgcaaatataaacttgttaatgatgcatttgatttatattctgaaatggctgctaagagaattt 24711634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 31000531 - 31000442
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatt 298  Q
    |||||||  ||||||||||||||||| |||||  |||||||||| |  ||||| | |||||||| |||||||||| ||| ||||||||||    
T  31000531 atgtacaccacaattattgatagtttatgcaaatataaacttgtcaacgatgcttttgatttatattctgaaatggttgctaagagaatt 31000442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 24272540 - 24272440
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg 308  Q
    |||||||| || |||||||||||  ||||||| ||||||||||  | |||||| | |||||||| |||||||||| ||  |||||||||||| || ||||    
T  24272540 atgtacaacaccattattgatagcatgtgcaaagataaacttgataatgatgcttttgatttatattctgaaatggtttctaagagaattttccctgatg 24272441  T
Q  309 t 309  Q
    |    
T  24272440 t 24272440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 28927683 - 28927501
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctg 200  Q
    ||||||||||||||||||||||| ||||||||||||   ||| |||||||||| ||  ||||  | || |||    ||||||||   |||||||   |||    
T  28927683 gttagttatgggaccttgatcaacggattatgtaaagttggacaaacaagagcagctttgcaattgctgagacgagttgatgggaaattggttcaacctg 28927584  T
Q  201 atgccgtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatg 283  Q
    |||  || ||||||| ||  |||||||||||| |||| || ||||||||||| | ||| || | |||||||| ||||||||||    
T  28927583 atgtggtaatgtacactatgattattgatagtatgtgtaaagataaacttgttaatgaagcttttgatttatattctgaaatg 28927501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 29876123 - 29876178
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgc 156  Q
    |||||||||| ||| ||||||||||| ||||||||   ||||||||||||||||||    
T  29876123 gttagttatgagacgttgatcaatgggttatgtaaggtaggagaaacaagagctgc 29876178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 30578328 - 30578261
Alignment:
Q  242 gataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    |||||||||||| ||||||| | |||||||| || ||| ||| |||| |||||||||||||| |||||    
T  30578328 gataaacttgtagttgatgcgtatgatttatattgtgagatggttgtcaagagaatttttcctgatgt 30578261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 29084316 - 29084374
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccct 159  Q
    ||||||||||| ||||||||| |||| ||||||||   ||||||||||||||| |||||    
T  29084316 gttagttatggaaccttgatccatggcttatgtaaggtaggagaaacaagagcagccct 29084374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 29115667 - 29115773
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg 308  Q
    |||||||| || |||||||||||  ||||||| | ||||||||| | ||| || | |||||||| |||||||||||||  |||| | |||| ||| ||||    
T  29115667 atgtacaacaccattattgatagcatgtgcaaagttaaacttgttaatgaagcttttgatttattttctgaaatgatttctaaggggatttctcccgatg 29115766  T
Q  309 tggttac 315  Q
    | |||||    
T  29115767 ttgttac 29115773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 29834621 - 29834711
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    ||||||||||| ||||| ||| || |||| || ||||||| ||| | |||||| | |||||||| |||||||||| ||  |||||||||||    
T  29834621 atgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgatttatattctgaaatggtttctaagagaattt 29834711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 29866055 - 29866145
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    ||||||||||| ||||| ||| || |||| || ||||||| ||| | |||||| | |||||||| |||||||||| ||  |||||||||||    
T  29866055 atgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgatttatattctgaaatggtttctaagagaattt 29866145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 29897488 - 29897578
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    |||||||||||  |||||||| || |||| || ||||||| ||| | |||||| | |||||||| |||||||||| |||  ||||||||||    
T  29897488 atgtacaataccgttattgatggtatgtgtaaagataaacatgttaatgatgcttttgatttatattctgaaatggttgcaaagagaattt 29897578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 29928679 - 29928769
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    ||||||||||| ||||| ||| || |||| || ||||||| ||| | |||||| | |||||||| |||||||||| |||  ||||||||||    
T  29928679 atgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgatttatattctgaaatggttgcaaagagaattt 29928769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 29098642 - 29098699
Alignment:
Q  102 ttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccct 159  Q
    |||| ||||||||||||||| |||| ||||||||   ||||||||||||||| |||||    
T  29098642 ttagctatgggaccttgatccatggcttatgtaaggtaggagaaacaagagcagccct 29098699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 29115560 - 29115617
Alignment:
Q  102 ttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccct 159  Q
    |||| ||||||||||||||| |||| ||||||||   ||||||||||||||| |||||    
T  29115560 ttagctatgggaccttgatccatggcttatgtaaggtaggagaaacaagagcagccct 29115617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 29211778 - 29211721
Alignment:
Q  102 ttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccct 159  Q
    |||| ||||||||||||||| |||| ||||||||   ||||||||||||||| |||||    
T  29211778 ttagctatgggaccttgatcgatggcttatgtaaggtaggagaaacaagagcagccct 29211721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 29886682 - 29886803
Alignment:
Q  188 ttggttcggtctgatgccgtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattg 287  Q
    ||||||| | ||||||  || ||||||||||| ||||| ||| || |||| || ||||||| ||| | |||||| | |||||||| ||||||||||  |     
T  29886682 ttggttcagcctgatgtggtaatgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgatttatattctgaaatggctt 29886781  T
Q  288 ttaagagaatttttccagatgt 309  Q
     |||||||||||| || |||||    
T  29886782 ctaagagaattttccccgatgt 29886803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 125 - 309
Target Start/End: Complemental strand, 44263270 - 44263086
Alignment:
Q  125 ggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgtacaatacaatta 224  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||  |||||||||||||||||||    
T  44263270 ggattatgtaaatctggagaaacaagagctgccctgcaggttcttagaaagattgatgggccgttggttcggcctaatgtggtcatgtacaatacaatta 44263171  T
Q  225 ttgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    || |||||||||||||  |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  44263170 ttcatagtttgtgcaaaaataaacttataattgatgcctctgctttatgttctgaaatgattgtcaagagaatttttccggatgt 44263086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 44657 - 44363
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||| ||||| |||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||||| ||| | ||| || |||||||||||||||    
T  44657 atcaaaggtctttgtcttaatggtgaggttaggaaagccctttactttcataacgatgttatagcaaagggattttatcttaatgaggttagttatggga 44558  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgta 213  Q
    |||||||||| |||||||||||| | || ||||| | ||||||  ||  | | |||||||||||||| ||   |||||||  | |||||| ||| |||||    
T  44557 ccttgatcaacggattatgtaaatccggtgaaactaaagctgcattgtcgttgcttagaaagattgaaggctcgttggttaagcctgatgtcgttatgta 44458  T
Q  214 caatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg 308  Q
    ||| ||||| ||||| ||| | || || ||||| ||||| | |||||  | |||||||| |||||||||||||||||||| ||||| ||| ||||    
T  44457 caacacaatcattgacagtctctgtaaagataagcttgttagtgatgggtatgatttatattctgaaatgattgttaagaaaatttatcctgatg 44363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 309
Target Start/End: Original strand, 136672 - 136880
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctg 200  Q
    |||| ||||| |||||||||||||||||| |||||||  |||||||||||||||||| |||| ||  | |||||||||||||||   |||||     | |    
T  136672 gttacttatgcgaccttgatcaatggattgtgtaaaatgggagaaacaagagctgccttgcaagtgttgagaaagattgatgggaaattggtcaacaccg 136771  T
Q  201 atgccgtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttt 300  Q
    |||  || ||||| |  | |||||||||||||||||| || |||||||||||||||||||| | ||| |||| ||||||||||||||  |||| |||||     
T  136772 atgtggtaatgtatagcataattattgatagtttgtgtaaagataaacttgtaattgatgcttatgagttatattctgaaatgattgcaaagacaatttc 136871  T
Q  301 tccagatgt 309  Q
    ||| |||||    
T  136872 tcctgatgt 136880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 105316 - 105254
Alignment:
Q  224 attgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgatt 286  Q
    ||||||||||||||||| ||||||||||||| |||||| | ||| ||||  ||||||||||||    
T  105316 attgatagtttgtgcaaagataaacttgtaagtgatgcatatgagttatactctgaaatgatt 105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 139710 - 139804
Alignment:
Q  215 aatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    |||||||| |||||||||||||| || |||||| | ||| ||||||||| ||  |||| ||||||||||||||  |||| ||||| ||| |||||    
T  139710 aatacaatcattgatagtttgtgtaaagataaattggtacttgatgcctatgggttatattctgaaatgattgcaaagaaaatttatcctgatgt 139804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 24225922 - 24226038
Alignment:
Q  20 ggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttga 119  Q
    ||||| |||||||||||  |||||||| |||| ||| ||||||||||  |||| ||||||||||| ||||| ||  |||| |||||||||||||| ||||    
T  24225922 ggtctttgtcttaatggcgaggttaggaaagctctttactttcatgatcatgttatagcaaagggatttcatctgaatcatgttagttatgggacattga 24226021  T
Q  120 tcaatggattatgtaaa 136  Q
    |||| || |||||||||    
T  24226022 tcaacgggttatgtaaa 24226038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 11990535 - 11990796
Alignment:
Q  26 tgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatgggaccttgatcaatg 125  Q
    ||||||||||||||||| | ||||||  | |||||||||||| ||||  | |||   || |||||| | |||||  |||| |||||||||||||||||||    
T  11990535 tgtcttaatggtaaggtcaaggaagcattgcactttcatgaccatgtgcttgcacttggatttcacttggatcaatttagctatgggaccttgatcaatg 11990634  T
Q  126 gattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatgggctgttggttcggtctgatgccgtcatgtacaatacaattat 225  Q
    | || ||||||| ||| ||||||||| | ||| ||||  | || |||||||||||||||   |||||   |    |||  || ||||| || ||||| ||    
T  11990635 gcttgtgtaaaataggggaaacaagaacagccttgcaaatgctgagaaagattgatgggaaattggtcaagatcaatgtggtaatgtataacacaatcat 11990734  T
Q  226 tgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattg 287  Q
    |||||||||||| ||  ||||| | ||||||||||||| ||| |||| |||| |||||||||    
T  11990735 tgatagtttgtgtaaacataaattggtaattgatgcctatgagttatattctcaaatgattg 11990796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 16350465 - 16350545
Alignment:
Q  218 acaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatt 298  Q
    ||||| |||||| ||||||| || |||||||| |||| |||||||| || ||||| ||| ||||||||||| |||||||||    
T  16350465 acaatcattgatggtttgtgtaaagataaactagtaactgatgcctatggtttatattcagaaatgattgtaaagagaatt 16350545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 24219828 - 24219738
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    |||||||| || ||||||||| || ||||||| ||||||||||| |  ||||| | |||||| | |||||||||| ||| |||||||||||    
T  24219828 atgtacaacacgattattgatggtgtgtgcaaagataaacttgttaacgatgcttttgatttctattctgaaatggttgctaagagaattt 24219738  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 24226068 - 24226179
Alignment:
Q  198 ctgatgccgtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaat 297  Q
    |||||| |||||||||||| ||||| ||||| | | | || || ||||| ||||| | |||||  | |||||||| |||||||||||||| ||||| |||    
T  24226068 ctgatgtcgtcatgtacaacacaatcattgacattctctgtaaagataagcttgttagtgatgggtgtgatttatattctgaaatgattgataagaaaat 24226167  T
Q  298 ttttccagatgt 309  Q
    || ||| |||||    
T  24226168 ttatcctgatgt 24226179  T

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Target: scaffold0177 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 26652 - 26735
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgcaggttcttagaaagattgatggg 184  Q
    ||||| ||||||| ||||||||||||||| |||||||  |||||||||||||||||| |||| ||  | |||||||||||||||    
T  26652 gttagctatgggatcttgatcaatggattgtgtaaaatgggagaaacaagagctgccttgcaagtgttgagaaagattgatggg 26735  T

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Target: scaffold1840 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 823 - 905
Alignment:
Q  217 tacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    |||||| |||||| |||||||||| ||||||||||||| |||||| | ||| |||| |||||||||||||   ||||||||||    
T  823 tacaatcattgatggtttgtgcaaagataaacttgtaaatgatgcatatgagttatattctgaaatgattacaaagagaattt 905  T

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Target: scaffold1840; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 707 - 759
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagc 153  Q
    ||||| || |||||||||||||||||||| ||||||| ||| |||||||||||    
T  707 gttagctacgggaccttgatcaatggattgtgtaaaataggggaaacaagagc 759  T

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Target: scaffold0572 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 2645 - 2727
Alignment:
Q  217 tacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaattt 299  Q
    |||||| |||||| |||||||||| ||||||||||||| |||||| | ||| |||| |||||||||||||   ||||||||||    
T  2645 tacaatcattgatggtttgtgcaaagataaacttgtaaatgatgcatatgagttatattctgaaatgattacaaagagaattt 2727  T

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Target: scaffold0572; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 2529 - 2581
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagc 153  Q
    ||||| || ||||||||||||||||| || ||||||| ||| |||||||||||    
T  2529 gttagctacgggaccttgatcaatggcttgtgtaaaataggggaaacaagagc 2581  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 10129345 - 10129494
Alignment:
Q  11 atcatcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatg 110  Q
    ||||| || ||||| |||||||| ||  ||||| | |||||  | |||||||||||| | ||  ||||| |||| |||||  |  |||||||||||||||    
T  10129345 atcattaagggtctctgtcttaaaggcgaggttcgtgaagcattgcactttcatgacaaggtggtagcacagggatttcagttgaatcaggttagttatg 10129444  T
Q  111 ggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctg 160  Q
    |  ||||||| |||||||| ||||||   |||||||||||||||||||||    
T  10129445 gagccttgattaatggattgtgtaaagttggagaaacaagagctgccctg 10129494  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 10129558 - 10129643
Alignment:
Q  224 attgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    |||||| || ||||||| ||||||||||| | |||||| | | |||||| |||||||||||| | ||||||||||||||| |||||    
T  10129558 attgatggtatgtgcaaagataaacttgttaatgatgcttttaatttatattctgaaatgatcgctaagagaatttttcctgatgt 10129643  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 41315675 - 41315753
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattg 287  Q
    ||||| || ||||| |||||| ||||||| || ||||| ||||||| |||||| | ||| |||| ||||||||||||||    
T  41315675 atgtataacacaataattgatggtttgtgtaaagataagcttgtaaatgatgcttatgagttatattctgaaatgattg 41315753  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 19489653 - 19489733
Alignment:
Q  206 gtcatgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgatt 286  Q
    |||||||| | || ||||||||||| | | || || ||||||| ||||| |||||| | |||||||| |||||||||||||    
T  19489653 gtcatgtatagtataattattgataatctttgtaaagataaacatgtaaatgatgcttttgatttatattctgaaatgatt 19489733  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 3642248 - 3642396
Alignment:
Q  14 atcaatggtctatgtcttaatggtaaggttagggaagcccttcactttcatgacgatgtcatagcaaaggggtttcaccttgatcaggttagttatggga 113  Q
    ||||||||| | |||||||| |||||| | | ||||||  | |||||||||||| |||| || |||   || |||||| | ||||| ||||||||  |||    
T  3642248 atcaatggtatttgtcttaacggtaagctcaaggaagctttgcactttcatgaccatgtgattgcacttggatttcacttggatcaagttagttacagga 3642347  T
Q  114 ccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgca 162  Q
    ||||||||||||| || |||||||  || ||||||||||| ||| ||||    
T  3642348 ccttgatcaatgggttgtgtaaaatcggtgaaacaagagccgccttgca 3642396  T

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Target: scaffold0308 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 8293 - 8354
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgca 162  Q
    ||||| |||||||||||||||||||| || ||||||| ||| ||||||||||| ||| ||||    
T  8293 gttagctatgggaccttgatcaatggcttgtgtaaaataggggaaacaagagcagccttgca 8354  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 126824 - 126763
Alignment:
Q  101 gttagttatgggaccttgatcaatggattatgtaaaacaggagaaacaagagctgccctgca 162  Q
    ||||| |||||||||||||||||||| || ||||||| ||| ||||||||||| ||| ||||    
T  126824 gttagctatgggaccttgatcaatggcttgtgtaaaataggggaaacaagagcagccttgca 126763  T

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Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 54294 - 54188
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg 308  Q
    |||||||||||  |||||||| || |||  || ||||||| ||| | |||||| | |||||||| |||||||||| |||  |||||||||| ||| ||||    
T  54294 atgtacaataccgttattgatggtatgtataaagataaacatgttaatgatgcttttgatttatattctgaaatggttgcaaagagaatttctcccgatg 54195  T
Q  309 tggttac 315  Q
    | |||||    
T  54194 ttgttac 54188  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 15063597 - 15063544
Alignment:
Q  81 aggggtttcaccttgatcaggttagttatgggaccttgatcaatggattatgta 134  Q
    ||||||||||  | ||||| |||||||||||||| ||||||||||| |||||||    
T  15063597 aggggtttcagttggatcaagttagttatgggacgttgatcaatgggttatgta 15063544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 15063457 - 15063369
Alignment:
Q  221 attattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatgt 309  Q
    |||||||||||| |||| |||||||||||||| |  ||||| | |||||||| || ||||||| ||  ||| ||||||| ||| |||||    
T  15063457 attattgatagtatgtgtaaggataaacttgttaacgatgcttttgatttatattgtgaaatggtttctaaaagaatttctcctgatgt 15063369  T

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Target: scaffold0237 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 21749 - 21849
Alignment:
Q  209 atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattgatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg 308  Q
    ||||||||||| ||||| ||| || |||| || ||||||| ||| | |||||| | |||||||| |||||||| | ||  |||||||||||| || ||||    
T  21749 atgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgatttatattctgaaaaggtttctaagagaattttccccgatg 21848  T
Q  309 t 309  Q
    |    
T  21849 t 21849  T

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