View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_2 (Length: 538)
Name: NF9858_low_2
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 34 - 451
Target Start/End: Complemental strand, 27147667 - 27147235
Alignment:
| Q |
34 |
caagaataacattgctgatgcacttactaatgatgggaaccatgatcatggtaatgtacagaaaaatggagagaatctaacacttcataacacctttgaa |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27147667 |
caagaataacattgctgatgcacttactaatgatgggaaccaggatcatggtaatgtacagaaaaatggagagaatctaacacttcataacacctttgac |
27147568 |
T |
|
| Q |
134 |
gttttagatttagacactgcgcagggcatagtggattctacaacaaatgataaggca--------------aatggatacgcaaatggataaaaatccaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||| |
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| T |
27147567 |
gttttagatttagacactgcgcagggcatagtggattctacaacaaatgataaggaatctaatcccactgaactggatatgcaaatggataaaaatccaa |
27147468 |
T |
|
| Q |
220 |
gtgtggaggaatcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaacttagcaaaaattga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||| | ||||||||||||| |
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| T |
27147467 |
gtgtggaggaatcttgtttcttgatgagcctctgatgcattttacatctattccttcttggtcttggaagaggcttaatcttcaccctagcaaaaattga |
27147368 |
T |
|
| Q |
319 |
caagcactctcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagat |
418 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27147367 |
caggcactctcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagat |
27147268 |
T |
|
| Q |
419 |
ttcatatgtcttgattgtttccatccctcctga |
451 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
27147267 |
ttcatatgtcttgattgtttccctccctcctga |
27147235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 36769683 - 36769719
Alignment:
| Q |
193 |
tggatacgcaaatggataaaaatccaagtgtggagga |
229 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
36769683 |
tggatatgcaaatggataaaaatccaaatgtggagga |
36769719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 230 - 451
Target Start/End: Original strand, 9383011 - 9383233
Alignment:
| Q |
230 |
atcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaacttagcaaaaattg-acaagcactc |
327 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||| |||||| || ||| | |||| |
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| T |
9383011 |
atcttgtttcttgatgagcctctgatgcattttacatctattccttcttggtattggaagaggcttaatcttcaccttaacaaaaaatggacagggactc |
9383110 |
T |
|
| Q |
328 |
tcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgt |
427 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9383111 |
tcttggcattc-actcaatggtggccatctgcacctaatttcctccttaattttctctctagagatagattagggatgccatttactagatttcatatgt |
9383209 |
T |
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| Q |
428 |
cttgattgtttccatccctcctga |
451 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
9383210 |
cttgattgtttccctccctcctga |
9383233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 230 - 448
Target Start/End: Original strand, 30731516 - 30731735
Alignment:
| Q |
230 |
atcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaacttagcaaaaattg-acaagcactc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||| |||||||| |||||||||||||| ||| | |||| |
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| T |
30731516 |
atcttgtttcttgatgagcctctgatgcattttacatctattcatgcttggtattggaagaggcttaatcttcaccttagcaaaaattggacagggactc |
30731615 |
T |
|
| Q |
328 |
tcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgt |
427 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30731616 |
tcttggcattccactcaatggtggccatctgcac-tactttcttccttaattttctctctagagatagattagggatgccatttactagatttcatatgt |
30731714 |
T |
|
| Q |
428 |
cttgattgtttccatccctcc |
448 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
30731715 |
cttgattgtttccctccctcc |
30731735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 15485159 - 15485005
Alignment:
| Q |
34 |
caagaataacattgctgatgcacttactaatgatgggaaccatgatcatggtaatgtacagaaaaatggagagaatctaacacttcataacacctttgaa |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15485159 |
caagaataacattgttgatgcacttactaatgatgggaaccaggatcatggtaatgtacagaaaaatggagagaatctaacacttcacaacacctttgaa |
15485060 |
T |
|
| Q |
134 |
gttttagatttagacactgcgcagggcatagtggattctacaacaaatgataagg |
188 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |
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| T |
15485059 |
gttttagatttagacactacacagggcatagtggatgctacaacaaatgataagg |
15485005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 230 - 448
Target Start/End: Complemental strand, 15484295 - 15484081
Alignment:
| Q |
230 |
atcttgtttcttgatgagcctctgatgcaatttacatctactccttcttggtattggaagaggca-aatcttcaacttagcaaaaattgacaagcactct |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || |||| || |
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| T |
15484295 |
atcttgtttcttgatgagcctctgatgcattttacatctattccttcttggtattggaagaggcttaatcttcaccttagcaaaaaatggacagcaaact |
15484196 |
T |
|
| Q |
329 |
cttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcatatgtc |
428 |
Q |
| |
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| || || |||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15484195 |
tt----atccctaaaaatggtggccatctgcac-tactttcttccttaattttctctctagagatagattagggatgccatttactagatttcatatgtc |
15484101 |
T |
|
| Q |
429 |
ttgattgtttccatccctcc |
448 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
15484100 |
ttgattgtttccctccctcc |
15484081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 15484986 - 15484949
Alignment:
| Q |
193 |
tggatacgcaaatggataaaaatccaagtgtggaggaa |
230 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
15484986 |
tggatatgcaaatggataaaaatccaagtgtggaggaa |
15484949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 324 - 451
Target Start/End: Complemental strand, 44301962 - 44301835
Alignment:
| Q |
324 |
actctcttggcattccactcaatggtggccatctgcacctcctttcctcctgaattttctctctagagatagattagggatgccatttactagatttcat |
423 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44301962 |
actctcttggcattccactcaacggtggccatctgcacatactttcctccttaattttctctctagagatagattagggatgccatttactagatttcat |
44301863 |
T |
|
| Q |
424 |
atgtcttgattgtttccatccctcctga |
451 |
Q |
| |
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| ||||||||||||||| |||||||||| |
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| T |
44301862 |
aagtcttgattgtttccctccctcctga |
44301835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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