View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9858_low_20 (Length: 307)

Name: NF9858_low_20
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9858_low_20
NF9858_low_20
[»] chr4 (14 HSPs)
chr4 (57-307)||(7885275-7885525)
chr4 (79-245)||(4320525-4320691)
chr4 (79-275)||(4344625-4344821)
chr4 (103-245)||(4123869-4124011)
chr4 (79-275)||(4361056-4361252)
chr4 (96-200)||(6753014-6753118)
chr4 (97-200)||(6651121-6651224)
chr4 (96-200)||(6545371-6545475)
chr4 (103-275)||(4335324-4335496)
chr4 (115-220)||(4133367-4133472)
chr4 (123-200)||(6498476-6498553)
chr4 (96-193)||(6758785-6758882)
chr4 (7-46)||(21228389-21228428)
chr4 (126-230)||(6761316-6761420)
[»] chr7 (3 HSPs)
chr7 (57-307)||(18935333-18935583)
chr7 (57-307)||(34724470-34724720)
chr7 (103-277)||(36213759-36213933)
[»] scaffold0294 (1 HSPs)
scaffold0294 (57-307)||(8784-9034)
[»] chr6 (15 HSPs)
chr6 (103-305)||(5344810-5345012)
chr6 (103-245)||(5181857-5181999)
chr6 (103-307)||(5066624-5066828)
chr6 (79-307)||(5096655-5096883)
chr6 (103-307)||(5073838-5074042)
chr6 (102-305)||(5128346-5128549)
chr6 (96-307)||(5350341-5350552)
chr6 (105-185)||(5102546-5102626)
chr6 (103-239)||(5383341-5383477)
chr6 (97-168)||(5243837-5243908)
chr6 (103-245)||(5176748-5176890)
chr6 (103-305)||(5354544-5354746)
chr6 (199-307)||(5425857-5425965)
chr6 (103-245)||(5278575-5278717)
chr6 (85-245)||(5396959-5397119)
[»] scaffold0813 (1 HSPs)
scaffold0813 (97-200)||(4750-4853)
[»] chr5 (1 HSPs)
chr5 (102-245)||(8877618-8877761)
[»] chr8 (1 HSPs)
chr8 (103-182)||(31175919-31175998)
[»] chr3 (5 HSPs)
chr3 (178-239)||(47986857-47986918)
chr3 (178-239)||(47996144-47996205)
chr3 (178-239)||(48005431-48005492)
chr3 (178-239)||(48014716-48014777)
chr3 (103-167)||(32411133-32411197)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 57 - 307
Target Start/End: Original strand, 7885275 - 7885525
Alignment:
Q  57 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 156  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||| |||||||||||||| ||||||||| |    
T  7885275 tggagacagccaagactgaataatagaaggaaacactctacgtgcagatcctttataaccacatagagaaataaatgcaatgctttttgatcttactact 7885374  T
Q  157 gcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatc 256  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||    
T  7885375 gcaaagggcactcttgtgatagcagtgtcatccgcaaccaaggtggttaaagatttcatttgttctatatcctcttctaacttgtcaatttttgtacatc 7885474  T
Q  257 cagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaa 307  Q
    |||||| |||||| ||||| | ||||||||||||||| ||||| |||||||    
T  7885475 cagacagaatgagtgttttcagcgagtctaacttatatatgctccttggaa 7885525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 4320525 - 4320691
Alignment:
Q  79 atagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatag 178  Q
    ||||||||||||||   |||||  ||||||||||| ||||| ||||||||| || ||||||||||| | |||||||||| |||||| |||| ||| |||     
T  4320525 atagaaggaaacacatcacgtgagaatccttcatatccacacagagaaataaatccaatgctttttgaccttactaatgaaaagggaacttttgttatac 4320624  T
Q  179 cagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    |||| ||||  |||| || |||||||||||||| ||||||||  |  |||||||||||||| |||||    
T  4320625 cagtattatttgcaatcagggtggttaaagattccatttgttccaagtcctcttccaacttgtcaat 4320691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 275
Target Start/End: Complemental strand, 4344821 - 4344625
Alignment:
Q  79 atagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatag 178  Q
    ||||||||||||||   |||||  ||||||||||| ||||| | ||||||| || |||||| |||| | ||||||| || |||||| |||| ||| ||||    
T  4344821 atagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgaccttactactgaaaagggtacttttgttatag 4344722  T
Q  179 cagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagtttt 275  Q
    |||||||||  |||| ||  ||||||||||||| ||||||||  |  |||||||||||||| |||||  ||   |||||||| | ||||||||||||    
T  4344721 cagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttccaacttgtcaatcattaaacatccagatagaatgagagtttt 4344625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 4123869 - 4124011
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    ||||||||||| ||||| ||||||||| || ||||||||||| | |||||||  | ||||||||||| ||| |||||||| ||||  |||| ||  ||||    
T  4123869 aatccttcatatccacacagagaaataaatccaatgctttttgaccttactaccgaaaagggcacttttgttatagcagtattatttgcaatcagagtgg 4123968  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    ||||||||| ||||||||  |  |||||||||||||| |||||    
T  4123969 ttaaagattccatttgttccaactcctcttccaacttgtcaat 4124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 275
Target Start/End: Complemental strand, 4361252 - 4361056
Alignment:
Q  79 atagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatag 178  Q
    ||||||||||||||   |||||  ||||||||||| ||||| | ||||||| || |||||| |||| ||||||| | || |||||| |||| ||| |||     
T  4361252 atagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgatcttacaattgaaaagggtacttttgttatac 4361153  T
Q  179 cagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagtttt 275  Q
    |||||||||  |||| ||  ||||||||||||| ||||||||  |  |||||||||||| | |||||  |||  |||||||| | ||||||||||||    
T  4361152 cagtgttatttgcaatcagagtggttaaagattccatttgttccaagtcctcttccaacgtgtcaatcattgaacatccagatagaatgagagtttt 4361056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 6753118 - 6753014
Alignment:
Q  96 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaacc 195  Q
    ||||| |||||||||| ||||||  | |||||||||| ||||||||||  ||||||||| || ||||||||||| ||| |||||||| |||||||||| |    
T  6753118 acgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagggcacttttgttatagcagtcttatccgcaatc 6753019  T
Q  196 aaggt 200  Q
    |||||    
T  6753018 aaggt 6753014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 6651224 - 6651121
Alignment:
Q  97 cgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaacca 196  Q
    |||| |||||||||| ||||||| |||||||||||| ||||| || || ||||||||| || ||| ||||||| ||| |||||||| |||||||||| ||    
T  6651224 cgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactattgaaaacggcacttttgttatagcagtcttatccgcaatca 6651125  T
Q  197 aggt 200  Q
    ||||    
T  6651124 aggt 6651121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 6545371 - 6545475
Alignment:
Q  96 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaacc 195  Q
    ||||| |||||||||| ||||||  | |||||||||| ||||||||||  |||| |||| || ||||||||||| ||| |||||||| |||||||||| |    
T  6545371 acgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatctaactattgaaaagggcacttttgttatagcagtcttatccgcaatc 6545470  T
Q  196 aaggt 200  Q
    |||||    
T  6545471 aaggt 6545475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 275
Target Start/End: Complemental strand, 4335496 - 4335324
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    ||||||||||| ||||| | ||| |||||  ||||||||||| |  |||||| || ||||||||||| ||| ||| |||||||||| || |  |  ||||    
T  4335496 aatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttatctgccatgagagtgg 4335397  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagtttt 275  Q
    ||||||||| ||||||||  |  |||||||||||||| ||||| |||   ||||| || | ||||||||||||    
T  4335396 ttaaagattccatttgttccaagtcctcttccaacttgtcaatctttaaacatcctgatagaatgagagtttt 4335324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 4133367 - 4133472
Alignment:
Q  115 ccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttca 214  Q
    ||||| |||||||||||| ||||||||||| | ||| | | || ||||||||||| ||| || |||||||||||| ||| ||  ||||||||||| | ||    
T  4133367 ccacaaagagaaatatattcaatgctttttgaccttgcgactgaaaagggcacttttgttattgcagtgttatccacaatcagagtggttaaagactcca 4133466  T
Q  215 tttgtt 220  Q
    ||||||    
T  4133467 tttgtt 4133472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 6498476 - 6498553
Alignment:
Q  123 agaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggt 200  Q
    |||||| ||| ||||||||||| ||||||||| || |||||| |||| ||| |||||||| |||||||||| ||||||    
T  6498476 agaaatgtatccaatgctttttgatcttactattgaaaagggaacttttgttatagcagtcttatccgcaatcaaggt 6498553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 6758882 - 6758785
Alignment:
Q  96 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaa 193  Q
    |||||||||||||||| ||||||| ||||||||| ||  |||||||||| |||||| || || || ||| ||||| || || ||||| ||||||||||    
T  6758882 acgtgcaaatccttcaaagccacacagagaaataaatctaatgctttttaatcttaatattgaaatgggtacttccgttattgcagtcttatccgcaa 6758785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 21228428 - 21228389
Alignment:
Q  7 aatccctcacaaatacttgccacagtttgattcaattgag 46  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  21228428 aatccctcacaaatacttgctacagtttgattcaattgag 21228389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 6761420 - 6761316
Alignment:
Q  126 aatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttata 225  Q
    ||||||| |||| |||||  ||||||| | || ||||||||||| ||| |||||||| |||||||||| |||||| || || |||| ||| |||| |||     
T  6761420 aatatatccaatacttttgaatcttacaattgaaaagggcacttttgttatagcagtcttatccgcaatcaaggttgtgaacgattccatctgttctatg 6761321  T
Q  226 tcctc 230  Q
    |||||    
T  6761320 tcctc 6761316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 57 - 307
Target Start/End: Complemental strand, 18935583 - 18935333
Alignment:
Q  57 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 156  Q
    |||||||| | ||||||||||||| |||||||||||  ||||||| ||||||||| | ||||| || |||||| || ||||||||||| ||||||||| |    
T  18935583 tggagacatccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttgatcttactact 18935484  T
Q  157 gcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatc 256  Q
    ||||||||||||  ||| | |||||| ||||||||||||| |||||| |||||| |||| |||| ||| |||||||||||||| ||||||||||| ||||    
T  18935483 gcaaagggcactcttgttacagcagtcttatccgcaaccagggtggtcaaagatgtcatctgttctatgtcctcttccaacttgtcaatttttgtacatc 18935384  T
Q  257 cagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaa 307  Q
    |||| |||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  18935383 cagataaaatgagagctttgaccgactctaatttatagatgcttcttggaa 18935333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 307
Target Start/End: Original strand, 34724470 - 34724720
Alignment:
Q  57 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 156  Q
    |||||||| | ||||||||||||| ||||| |||||  ||||||||||||||||| | ||||| || |||||| || ||||||||||| ||||||||| |    
T  34724470 tggagacatccaagactgaataattgaagggaacacattacgtgcaaatccttcaaatccacaaagtgaaataaatccaatgctttttgatcttactact 34724569  T
Q  157 gcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatc 256  Q
    ||||| || ||   ||| | || ||| ||||||||||| |   |||| |||||  ||||||||| ||| |||||||||||||| ||||||||||| ||||    
T  34724570 gcaaatggaacccttgttacagaagtcttatccgcaactagaatggtcaaagaagtcatttgttctatgtcctcttccaacttgtcaatttttgtacatc 34724669  T
Q  257 cagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaa 307  Q
    |||||| |||||||||||| || || |  || |||||||||||||||||||    
T  34724670 cagacacaatgagagtttttactgacttcaatttatagatgcttcttggaa 34724720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 277
Target Start/End: Original strand, 36213759 - 36213933
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    |||||||||||||| || | ||| ||||| || ||||||||  ||||||||| || ||| ||||||  ||| || ||||||||||  |||| ||||||||    
T  36213759 aatccttcatagccgcacaaagatatataagcgatgcttttagatcttactactgaaaatggcactcttgttattgcagtgttatttgcaatcaaggtgg 36213858  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaa 277  Q
    ||||||||| ||| ||||  || ||||||||||| || ||||| ||||  |||||||| | ||||||||||||||    
T  36213859 ttaaagattccatctgttccatgtcctcttccaatttgtcaatctttgaacatccagaaagaatgagagttttaa 36213933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 307
Target Start/End: Original strand, 8784 - 9034
Alignment:
Q  57 tggagacaacaaagactgaataatagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaat 156  Q
    |||||||| | |||||| ||| ||||| ||||||||   |||||  |||||||||| ||| || | |||||||||| |||| |||||| | ||||||| |    
T  8784 tggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgaccttactatt 8883  T
Q  157 gcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatc 256  Q
    | ||||||||||  ||| |  ||||||||||| |||| ||  ||||||||||||| ||| |||| ||| |||||||||||||| |||||  || | || |    
T  8884 gaaaagggcactcttgttaatgcagtgttatctgcaagcagagtggttaaagattccatctgttctatgtcctcttccaacttgtcaatcattatacacc 8983  T
Q  257 cagacaaaatgagagttttaaccgagtctaacttatagatgcttcttggaa 307  Q
    |||| | |||||||||||| |  || |  ||||||||||||||||||||||    
T  8984 cagaaagaatgagagttttcagagatttcaacttatagatgcttcttggaa 9034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 103 - 305
Target Start/End: Complemental strand, 5345012 - 5344810
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    ||||||||||||||||| |||||||||||| ||||||||||| | ||||||| |  |||||| |||| ||| || ||||||||||  || | ||   |||    
T  5345012 aatccttcatagccacacagagaaatatatccaatgctttttgaccttactactaaaaagggaacttttgttattgcagtgttatttgcgatcagaatgg 5344913  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttct 302  Q
    |||||||||||||||||| ||  |||||||||||||| ||||| |||   || || || | |||||||||||| |  || |  |||||||||||||||||    
T  5344912 ttaaagatttcatttgttctaagtcctcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttttagagaattcaacttatagatgcttct 5344813  T
Q  303 tgg 305  Q
    |||    
T  5344812 tgg 5344810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 5181857 - 5181999
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    ||||||||||| ||||| |  ||||||||||||||||||||  |  |||||| || ||| ||||||  ||| || ||||||||||  |||| ||| ||||    
T  5181857 aatccttcatatccacacaaggaaatatatgcaatgcttttggactttactactgaaaacggcactcttgttattgcagtgttatttgcaatcaatgtgg 5181956  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    ||||||||||||||||||  | ||||||||||||||| |||||    
T  5181957 ttaaagatttcatttgttccaaatcctcttccaacttgtcaat 5181999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 307
Target Start/End: Original strand, 5066624 - 5066828
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    |||||||||||||| || | ||| || ||| ||||||||||| | ||||||| || |||||| | |  | | || ||||| ||||  |||| ||  ||||    
T  5066624 aatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtgcaagcagagtgg 5066723  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttct 302  Q
    ||||||||| |||||||| ||| |||||||| ||||| |||||  || | || ||||| | ||||||||||||||  || |  |||||||||||||||||    
T  5066724 ttaaagattccatttgttctatgtcctcttctaacttgtcaatcattatacacccagaaagaatgagagttttaagagatttcaacttatagatgcttct 5066823  T
Q  303 tggaa 307  Q
    |||||    
T  5066824 tggaa 5066828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 307
Target Start/End: Complemental strand, 5096883 - 5096655
Alignment:
Q  79 atagaaggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatag 178  Q
    ||||| ||||||||   ||||| ||||||||||| |||||| |||||||| ||| ||||||||||| | ||||||| || |||||| |||  | | ||      
T  5096883 atagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctttttgaccttactactgaaaagggtactctttttattc 5096784  T
Q  179 cagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaac 278  Q
    |||||||||  |||| ||   ||||||| |||| |||||||| ||| |||||||||||||  |||||  || | || ||||| | |||||||||||| |     
T  5096783 cagtgttatttgcaagcagaatggttaatgattccatttgttctatgtcctcttccaactcgtcaatcattatacacccagaaagaatgagagttttcag 5096684  T
Q  279 cgagtctaacttatagatgcttcttggaa 307  Q
     || |  |||||||||||||||| |||||    
T  5096683 agatttcaacttatagatgcttcctggaa 5096655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 307
Target Start/End: Original strand, 5073838 - 5074042
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    |||||||||||||| || | |||||||||| ||||||||||  | ||||||| || ||||||||||  ||| || || |||||||  || | ||  ||||    
T  5073838 aatccttcatagccgcacaaagaaatatatccaatgcttttcgaccttactactgaaaagggcactcttgttattgcggtgttatttgctatcagagtgg 5073937  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttct 302  Q
    |||||||| |||| |||| ||  |||||||||||||| |||||  |||  || || || | |||||||||||| |  || |  ||||||||||| |||||    
T  5073938 ttaaagatgtcatctgttctaagtcctcttccaacttgtcaatcattgaacacccggaaagaatgagagtttttagagatttcaacttatagatacttct 5074037  T
Q  303 tggaa 307  Q
    |||||    
T  5074038 tggaa 5074042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 305
Target Start/End: Original strand, 5128346 - 5128549
Alignment:
Q  102 aaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtg 201  Q
    ||||||||||| ||| || ||||| |||||| ||||||||||| | ||||||| || |||||| |||  | | || ||||||||||  |||| ||  ||     
T  5128346 aaatccttcatggccgcacagagagatatatccaatgctttttgaccttactactgaaaagggtactctttttattgcagtgttatttgcaagcagagtt 5128445  T
Q  202 gttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttc 301  Q
    ||||| |||| ||||||||  |  |||||||||||||| |||||  || | || ||||| | |||||||||||| |  || |  ||||||||||||||||    
T  5128446 gttaatgattccatttgttccaagtcctcttccaacttgtcaatcattatacaaccagaaagaatgagagttttcaaagatttcaacttatagatgcttc 5128545  T
Q  302 ttgg 305  Q
    ||||    
T  5128546 ttgg 5128549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 307
Target Start/End: Complemental strand, 5350552 - 5350341
Alignment:
Q  96 acgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaacc 195  Q
    ||||| ||||||||||||||| || | ||| || ||| ||||||||||| | ||||||| || |||||| | |  | | || ||||| ||||  |||| |    
T  5350552 acgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaagggtattctttttattgcagttttatgtgcaagc 5350453  T
Q  196 aaggtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttataga 295  Q
    |  ||||||||||||| |||||||| ||| |||||||||||||| |||||  || | || || || | |||||||||||| |  || |  |||||| |||    
T  5350452 agagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattatacaccctgaaagaatgagagttttgagagatttcaacttaaaga 5350353  T
Q  296 tgcttcttggaa 307  Q
    ||||||||||||    
T  5350352 tgcttcttggaa 5350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 5102546 - 5102626
Alignment:
Q  105 tccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgtt 185  Q
    ||||||||||||||| ||||| |||||| ||||||||||| | ||||||| || ||||||||||  ||| || ||||||||    
T  5102546 tccttcatagccacatagagagatatatccaatgctttttgaccttactactgaaaagggcactgttgttattgcagtgtt 5102626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 5383477 - 5383341
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    |||||||||| ||| || | |||||||||| |||| |||||| | ||||  | || || ||| |||  ||| || ||||||||||| |||| ||| || |    
T  5383477 aatccttcatggccgcacaaagaaatatatacaatactttttgaccttaaaattgaaaggggaactcttgttattgcagtgttatctgcaagcaaagtag 5383378  T
Q  203 ttaaagatttcatttgttttatatcctcttccaactt 239  Q
    ||||||||| |||||||| ||| ||||||||||||||    
T  5383377 ttaaagattccatttgttctatgtcctcttccaactt 5383341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 5243837 - 5243908
Alignment:
Q  97 cgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcact 168  Q
    |||| |||||||||||||||||| | |||||||||| | ||||||||| | ||||||| || ||||||||||    
T  5243837 cgtgaaaatccttcatagccacacaaagaaatatatccgatgctttttgaccttactactgaaaagggcact 5243908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 5176890 - 5176748
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    |||||||||||||| || | ||| || ||| ||||||||||| | ||||||| ||  |||||||||  ||| || ||||||||||  |||| ||  || |    
T  5176890 aatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactattgacaagggcactcttgttattgcagtgttatttgcaagcagagtag 5176791  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    ||||||||| ||||||||  |  |||||||||||||| |||||    
T  5176790 ttaaagattccatttgttccaagtcctcttccaacttgtcaat 5176748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 305
Target Start/End: Original strand, 5354544 - 5354746
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    ||||||||||||||||| | |||||||||| ||||||||||  | || |||| ||  ||||| |||  ||| || ||||||| ||  |||| || |||||    
T  5354544 aatccttcatagccacataaagaaatatatccaatgcttttggaactaactattgagaagggtactcttgttattgcagtgtcatttgcaagcagggtgg 5354643  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgcttct 302  Q
    ||||||||| || |||||  |  |||||||||||||| || |  ||| | || ||||| | |||||||||||| |  || |  ||||| |||||||||||    
T  5354644 ttaaagattccaattgttccaagtcctcttccaacttgtctaactttttacaaccagaaagaatgagagttttcaaagatttcaacttgtagatgcttct 5354743  T
Q  303 tgg 305  Q
    |||    
T  5354744 tgg 5354746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 5425965 - 5425857
Alignment:
Q  199 gtggttaaagatttcatttgttttatatcctcttccaacttttcaatttttgtgcatccagacaaaatgagagttttaaccgagtctaacttatagatgc 298  Q
    ||||||||||||| |||||||| ||| |||||||||||||| |||||  ||   || ||||| | |||||||||||| |  || |  ||||||||||||     
T  5425965 gtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattacacacccagaaagaatgagagttttcagagatttcaacttatagatgt 5425866  T
Q  299 ttcttggaa 307  Q
    |||||||||    
T  5425865 ttcttggaa 5425857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 5278717 - 5278575
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtgg 202  Q
    |||||||||||||| || | ||| || ||| ||||||||||| | |||||||  |  |||||||||  ||| || ||||||||||  |||| ||  || |    
T  5278717 aatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactatagacaagggcactcttgttattgcagtgttatttgcaagcagagtag 5278618  T
Q  203 ttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    ||||||||| ||||||||  |  |||||||||||||| |||||    
T  5278617 ttaaagattccatttgttccaagtcctcttccaacttgtcaat 5278575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 245
Target Start/End: Complemental strand, 5397119 - 5396959
Alignment:
Q  85 ggaaacactctacgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgt 184  Q
    |||||||||  || || |||||||||||| || || | ||| ||| || ||||||||||| | ||||  | || ||| ||||||  | | || |||||||    
T  5397119 ggaaacacttcacatgaaaatccttcatatccgcacaaagagataaatccaatgctttttaaccttaaaattgaaaacggcactctttttattgcagtgt 5397020  T
Q  185 tatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    |||  |||||||||||||||||||||| ||| ||||  | ||| |||||||| || |||||    
T  5397019 tatttgcaaccaaggtggttaaagattccatctgttccaaatcttcttccaatttgtcaat 5396959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 4750 - 4853
Alignment:
Q  97 cgtgcaaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaacca 196  Q
    |||| |||||||||| ||||||| |||||||||||| ||||| || || ||||||||| || ||| ||||||| ||| |||||||| |||||||||| ||    
T  4750 cgtgaaaatccttcaaagccacatagagaaatatatccaatgtttcttaatcttactattgaaaacggcacttttgttatagcagtcttatccgcaatca 4849  T
Q  197 aggt 200  Q
    ||||    
T  4850 aggt 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 8877761 - 8877618
Alignment:
Q  102 aaatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagtgttatccgcaaccaaggtg 201  Q
    ||||||||||||||| || | |||||||||| ||||||||||| | |||||||||| ||| || |||  | | || ||||||||||  |||| ||  |||    
T  8877761 aaatccttcatagccgcacaaagaaatatatccaatgctttttgaccttactaatgaaaatggtactctttttattgcagtgttatttgcaagcagagtg 8877662  T
Q  202 gttaaagatttcatttgttttatatcctcttccaacttttcaat 245  Q
    |||||||||||||| |||| ||  ||||| |||||||| |||||    
T  8877661 gttaaagatttcatctgttctaagtcctcctccaacttgtcaat 8877618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 31175998 - 31175919
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcacttctgtgatagcagt 182  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| ||||| ||| || | ||||||||| | ||||| ||||    
T  31175998 aatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagt 31175919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 47986857 - 47986918
Alignment:
Q  178 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 239  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  47986857 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 47986918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 47996144 - 47996205
Alignment:
Q  178 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 239  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  47996144 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 47996205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 48005431 - 48005492
Alignment:
Q  178 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 239  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  48005431 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 48005492  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 48014716 - 48014777
Alignment:
Q  178 gcagtgttatccgcaaccaaggtggttaaagatttcatttgttttatatcctcttccaactt 239  Q
    ||||||||||  |||||||| || |||||||||||||||| ||  || ||||||||||||||    
T  48014716 gcagtgttatttgcaaccaaagtagttaaagatttcatttattccatgtcctcttccaactt 48014777  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 32411133 - 32411197
Alignment:
Q  103 aatccttcatagccacagagagaaatatatgcaatgcttttttatcttactaatgcaaagggcac 167  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||  ||||||||| || | |||||||    
T  32411133 aatccttcatatccacatagagatatatatgcgatgcttttcgatcttactattgaacagggcac 32411197  T

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