View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9858_low_21 (Length: 297)

Name: NF9858_low_21
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9858_low_21
NF9858_low_21
[»] chr5 (4 HSPs)
chr5 (149-284)||(201814-201948)
chr5 (1-63)||(201567-201629)
chr5 (90-137)||(9190088-9190137)
chr5 (79-137)||(21961586-21961646)
[»] chr7 (1 HSPs)
chr7 (78-137)||(10577639-10577700)
[»] chr1 (1 HSPs)
chr1 (78-137)||(35879706-35879767)
[»] chr3 (1 HSPs)
chr3 (85-138)||(34008376-34008431)
[»] chr2 (1 HSPs)
chr2 (85-138)||(30992372-30992427)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 201814 - 201948
Alignment:
Q  149 ttaatctcattagtttattttaaacatagatcgaatacttatttaaatgtatttatataaaatgggtttttaaataggctaatatgtcatctcatatttt 248  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  201814 ttaatctcattagtttattttaaac-tagatcgaatacttatttaaatgtatttatataaaatgggtttttaaataggctaatatgtcatctcatatttt 201912  T
Q  249 ctaaacatgactcaaatctaaaattgtttatcttct 284  Q
    ||||||||||||||||||||||||||||||||||||    
T  201913 ctaaacatgactcaaatctaaaattgtttatcttct 201948  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 201567 - 201629
Alignment:
Q  1 catgttatatatgtcatttatgaatggattttcttttttgcctcatttaacgcctctagaagc 63  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  201567 catgttatatatgttatttatgaatggattttcttttttgcctcatttaacgcctctagaagc 201629  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 9190137 - 9190088
Alignment:
Q  90 aaatatgatatcatcta--gtcaaattctctaaaatatcatattaaatat 137  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||||    
T  9190137 aaatatgatatcatctatagtcaaattctctaaaatgtcatgttaaatat 9190088  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 21961586 - 21961646
Alignment:
Q  79 aactaaaattgaaatatgatatcatcta--gtcaaattctctaaaatatcatattaaatat 137  Q
    |||||||||||||||||||||| || ||  ||||| ||||||||||| |||| ||||||||    
T  21961586 aactaaaattgaaatatgatattatatattgtcaacttctctaaaatgtcatgttaaatat 21961646  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 10577700 - 10577639
Alignment:
Q  78 aaactaaaattgaaatatgatatcatcta--gtcaaattctctaaaatatcatattaaatat 137  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||||    
T  10577700 aaactaaaattgaaatatgatatcatatattgtcaaattctctaaaatatcatgttaaatat 10577639  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 35879767 - 35879706
Alignment:
Q  78 aaactaaaattgaaatatgatatcat--ctagtcaaattctctaaaatatcatattaaatat 137  Q
    ||||||||||||||||||||||||||   |||| |||||||||||||| |||| ||||||||    
T  35879767 aaactaaaattgaaatatgatatcataaatagttaaattctctaaaatgtcatgttaaatat 35879706  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 34008376 - 34008431
Alignment:
Q  85 aattgaaatatgatatcatcta--gtcaaattctctaaaatatcatattaaatatt 138  Q
    ||||||||||||||||||| ||  || |||||||||||||| |||| |||||||||    
T  34008376 aattgaaatatgatatcatatatagtaaaattctctaaaatgtcatgttaaatatt 34008431  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 30992427 - 30992372
Alignment:
Q  85 aattgaaatatgatatc--atctagtcaaattctctaaaatatcatattaaatatt 138  Q
    |||||||||||||||||  || |||||||| |||||||||| ||||||||| ||||    
T  30992427 aattgaaatatgatatcatatatagtcaaaatctctaaaatgtcatattaactatt 30992372  T

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