View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_28 (Length: 258)
Name: NF9858_low_28
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 1529058 - 1528839
Alignment:
| Q |
23 |
tgatctgtcttttgaagcttgaaccagccggtgagcacactggttcaatggttgannnnnnnnnnnnattaccttacttctagtcttgcatacatagtaa |
122 |
Q |
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| T |
1529058 |
tgatccgtcttttgaagcttgaaccag----tgagcacactggtgcaatggttgatttgattttt--attaccttgcttctagtcttgcatacataataa |
1528965 |
T |
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| Q |
123 |
gatccatacgccaaggtaatattgcgacaaaggaaaaccaggaaaaatatccagtaactgctcataagttttatccaaaaacaaataacataaatttggt |
222 |
Q |
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| T |
1528964 |
gatccatactccaaggtaatattgtgaaaatggaaatc-aggaaaaatatcta-taactgttcataagttttatccaaaaacaaataacataaatttggt |
1528867 |
T |
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| Q |
223 |
ttttgaaagttaatatatgccctatgct |
250 |
Q |
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||||||||||||||||||| || ||||| |
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| T |
1528866 |
ttttgaaagttaatatatgacccatgct |
1528839 |
T |
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