View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_29 (Length: 251)
Name: NF9858_low_29
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_29 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 33499722 - 33499558
Alignment:
| Q |
91 |
tgggaatcagataaatacaatgtgaaattagggtttggtaaaaatgagagtgcttggaataagttacaagattaagagaaag--cactacgcatgtaagc |
188 |
Q |
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| T |
33499722 |
tgggaatcagataaatacaatgtgaaattagggtttggtaaaaatgagagtgcttggaataagttacaagattaagagaaagcacactacgcatgtaagc |
33499623 |
T |
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| Q |
189 |
aagtaagagaggaagtagatagcaaagggaagg--acatataaggattaaccaaactatttatag |
251 |
Q |
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| T |
33499622 |
aagtaagagaggaagtagatagcaaagggaaggacacatataaggtttaaccaaactatttatag |
33499558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 33499750 - 33499719
Alignment:
| Q |
13 |
caaaggagaaggaataagaaggagatcctggg |
44 |
Q |
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| T |
33499750 |
caaaggagaaggaataagaaggagatcctggg |
33499719 |
T |
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