View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_3 (Length: 526)
Name: NF9858_low_3
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 1854905 - 1855333
Alignment:
| Q |
18 |
caacttttatttaaattagcaaaataccatgaaaatttggaagggtttttattataaataacgaaacacccttactctaggccacaagtcagtcagtact |
117 |
Q |
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| T |
1854905 |
caacttttatttaaattagcaaaataccatgaaaatttggaagggtttttattataaataacgaaacacccttactccaggccacaagtcagtcagtact |
1855004 |
T |
|
| Q |
118 |
ccaatttaaaaatgaaggtcctgcaagtattaataatacttgctgcattagcacatttgatagaagcagttgcatttacacttgcatctgatcaacctaa |
217 |
Q |
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| T |
1855005 |
ccaatttaaaaatgaaggtcctgcaagtattaataatacttgctgcattagcacatttgatagaagcagttgcatttacacttgcatctgatcaacctaa |
1855104 |
T |
|
| Q |
218 |
acaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgttac |
317 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1855105 |
acaagtcctaccaggctgcaattacacctgtggaggtgtaaaagttccatatccatttggcataggaaattcaacagcacaagatcatacaccatgttac |
1855204 |
T |
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| Q |
318 |
ataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaa |
417 |
Q |
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| T |
1855205 |
ataaattccaaatttatgctcacttgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaa |
1855304 |
T |
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| Q |
418 |
tgagatttttcgtctcacgtctctgtacg |
446 |
Q |
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| T |
1855305 |
tgagatttttcgtctcacatctctgtacg |
1855333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 199 - 435
Target Start/End: Complemental strand, 1818102 - 1817866
Alignment:
| Q |
199 |
ttgcatctgatcaacctaaacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacaca |
298 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
1818102 |
ttgcatctgatcaacctaaacaagtcctaccaggctgcaattacacctgtggagatttaacaattccatatccatttggcataggaaattcaacagcaca |
1818003 |
T |
|
| Q |
299 |
agatcatacaccatgttacataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaat |
398 |
Q |
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| T |
1818002 |
acatcatacaccatgttacatggattcaaaatttgaactcacctgtgtaaacaactcaaaattaattcggcctaggggtatcgaagtcctggacataaat |
1817903 |
T |
|
| Q |
399 |
ccccaaggtcaaatggaaatgagatttttcgtctcac |
435 |
Q |
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| T |
1817902 |
ccccaaggtcaagtggaaatgaaattttcagtctcac |
1817866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 1845015 - 1844913
Alignment:
| Q |
217 |
aacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgtta |
316 |
Q |
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|||||||||||||||||||||| || |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1845015 |
aacaagtcctacctggctgcaactatacttgtggagatataaacattccatatccatttggcataggaaattcaacaacacaagatcatacaccatttta |
1844916 |
T |
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| Q |
317 |
cat |
319 |
Q |
| |
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||| |
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|
| T |
1844915 |
cat |
1844913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 517
Target Start/End: Original strand, 1855362 - 1855398
Alignment:
| Q |
481 |
ccgaaaaagcaaataaaccttctctcagagtttcttc |
517 |
Q |
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| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttc |
1855398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
330 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
429 |
Q |
| |
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|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
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| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
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| Q |
430 |
tc |
431 |
Q |
| |
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|| |
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|
| T |
37566844 |
tc |
37566845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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