View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9858_low_37 (Length: 240)

Name: NF9858_low_37
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9858_low_37
NF9858_low_37
[»] chr6 (35 HSPs)
chr6 (1-216)||(21160897-21161112)
chr6 (3-224)||(24941714-24941935)
chr6 (3-223)||(24934181-24934401)
chr6 (8-224)||(24739459-24739675)
chr6 (8-223)||(29950162-29950377)
chr6 (8-223)||(30149046-30149261)
chr6 (11-224)||(30154022-30154235)
chr6 (10-211)||(15727445-15727646)
chr6 (9-214)||(30132229-30132436)
chr6 (9-91)||(29954018-29954100)
chr6 (150-224)||(30053088-30053162)
chr6 (170-224)||(29953958-29954012)
chr6 (20-216)||(29834746-29834942)
chr6 (20-216)||(29866180-29866376)
chr6 (116-216)||(30134781-30134879)
chr6 (3-223)||(30578033-30578253)
chr6 (24-181)||(16702325-16702482)
chr6 (3-223)||(30028652-30028872)
chr6 (3-214)||(29881949-29882160)
chr6 (3-214)||(29909105-29909316)
chr6 (173-223)||(24884824-24884874)
chr6 (3-190)||(24264050-24264237)
chr6 (116-216)||(29902883-29902983)
chr6 (10-216)||(24272219-24272425)
chr6 (116-215)||(29348871-29348970)
chr6 (20-190)||(29366719-29366889)
chr6 (105-215)||(29073379-29073489)
chr6 (105-215)||(29105952-29106062)
chr6 (116-214)||(29928900-29928998)
chr6 (3-74)||(25450632-25450703)
chr6 (11-65)||(24730377-24730431)
chr6 (105-211)||(29894169-29894275)
chr6 (20-90)||(29897613-29897683)
chr6 (108-216)||(29889139-29889247)
chr6 (9-64)||(29946152-29946207)
[»] chr4 (1 HSPs)
chr4 (3-224)||(44262857-44263078)
[»] scaffold0110 (1 HSPs)
scaffold0110 (8-223)||(44134-44349)
[»] chr3 (3 HSPs)
chr3 (18-224)||(24226349-24226555)
chr3 (13-216)||(16350574-16350777)
chr3 (3-216)||(24219507-24219720)
[»] scaffold0014 (4 HSPs)
scaffold0014 (13-216)||(121743-121946)
scaffold0014 (13-143)||(136898-137028)
scaffold0014 (13-145)||(105081-105213)
scaffold0014 (13-193)||(139822-140002)
[»] scaffold0308 (1 HSPs)
scaffold0308 (13-199)||(8519-8705)
[»] chr5 (1 HSPs)
chr5 (8-194)||(20888108-20888292)
[»] scaffold0086 (1 HSPs)
scaffold0086 (19-216)||(31577-31774)
[»] chr1 (2 HSPs)
chr1 (15-216)||(17250839-17251040)
chr1 (13-220)||(41315793-41316000)
[»] scaffold0429 (1 HSPs)
scaffold0429 (10-211)||(5717-5918)
[»] scaffold0654 (1 HSPs)
scaffold0654 (18-211)||(1497-1690)
[»] scaffold0051 (2 HSPs)
scaffold0051 (10-193)||(43582-43765)
scaffold0051 (13-193)||(50799-50979)
[»] scaffold1840 (1 HSPs)
scaffold1840 (13-194)||(933-1114)
[»] scaffold0572 (1 HSPs)
scaffold0572 (13-194)||(2755-2936)
[»] scaffold0177 (1 HSPs)
scaffold0177 (13-200)||(26878-27065)
[»] scaffold0054 (1 HSPs)
scaffold0054 (105-215)||(53869-53979)
[»] scaffold0019 (1 HSPs)
scaffold0019 (13-194)||(126417-126598)
[»] chr7 (1 HSPs)
chr7 (24-194)||(3642572-3642742)
[»] chr2 (1 HSPs)
chr2 (116-181)||(15063183-15063248)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 21161112 - 21160897
Alignment:
Q  1 cctatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgt 100  Q
    |||||| |||||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  21161112 cctataatactttaatatatggcttttgcattgtgggtcaaatgaaacaagcaattgatttgttaaatgaaatgttgttgaaaaacatcagccccaatgt 21161013  T
Q  101 tgtaacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| |    
T  21161012 tgtaacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaaagtgttagcttttatgataaaacaaggcgtggaactt 21160913  T
Q  201 aatgttgttacttata 216  Q
    ||||||||||||||||    
T  21160912 aatgttgttacttata 21160897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 24941714 - 24941935
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||| |||| |||||||||||||||| |||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||     
T  24941714 tatactactctaatatatggcttttgtattgtgggtcaatttaaagaagctgttcgtttgttaaatcaaatgttgttgaaaaacatcagcccggatgttc 24941813  T
Q  103 taacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaa 202  Q
     ||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24941814 aaacttttaatacattggttgatggtttatgtaaggaaggagaaattaaacaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaa 24941913  T
Q  203 tgttgttacttatacttctttg 224  Q
    ||||||||||||||||||||||    
T  24941914 tgttgttacttatacttctttg 24941935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 24934181 - 24934401
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||| |||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||  | |||     
T  24934181 tatactactctaatatatggctgtttgattgtgggtcgattgaaagaagcagttggtttgttcaatcaaatgttgttgaaaaacattaaaccagacgttt 24934280  T
Q  103 taacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaa 202  Q
      || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  24934281 atacatttaatatattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggattctaa 24934380  T
Q  203 tgttgttacttatacttcttt 223  Q
    | |||||||||||| ||||||    
T  24934381 tattgttacttataattcttt 24934401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 24739675 - 24739459
Alignment:
Q  8 tactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaact 107  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||  |  ||   ||     
T  24739675 tactttaatgtatggctgtttgattgtgggtcgattgaaagaagcagttggtttgttcaatcaaatgttgttgaaaaacattaaaccagacatttataca 24739576  T
Q  108 tttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttg 207  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||      
T  24739575 tttaatatattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaagtgtggatcctgatgtca 24739476  T
Q  208 ttacttatacttctttg 224  Q
    ||||||||| |||||||    
T  24739475 ttacttataattctttg 24739459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 29950377 - 29950162
Alignment:
Q  8 tactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaact 107  Q
    |||| |||||||||| |||| |||| |||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||| ||  ||||| | |||    
T  29950377 tactctaatatatggtttttccattttgggtcaaatgaaagaagcagttggtttgttaaatcaaatgtcgatgaaaaacatcagtccggatgttcttact 29950278  T
Q  108 tttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttg 207  Q
    || |  |||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||| || |||    
T  29950277 ttcactacattggtcgatggtttatgtaagcaaggagaggtgaaaaaagctagacatgtgttggctgttatgataaaacaacgtgtggaacctgatattg 29950178  T
Q  208 ttacttatacttcttt 223  Q
    ||||||||| ||||||    
T  29950177 ttacttatagttcttt 29950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 30149046 - 30149261
Alignment:
Q  8 tactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaact 107  Q
    |||| |||||||||| |||| |||| |||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||| ||  ||||| | |||    
T  30149046 tactctaatatatggtttttccattttgggtcaaatgaaagaagcagttggtttgttaaatcaaatgtcgatgaaaaacatcagtccggatgttcttact 30149145  T
Q  108 tttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttg 207  Q
    || |  |||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||| || |||    
T  30149146 ttcactacattggtcgatggtttatgtaagtaaggagaggtgaaaaaagctagatatgtgttggctgttatgataaaacaacgtgtggaacctgatattg 30149245  T
Q  208 ttacttatacttcttt 223  Q
    ||||||||| ||||||    
T  30149246 ttacttatagttcttt 30149261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 30154022 - 30154235
Alignment:
Q  11 tttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-acttt 109  Q
    |||||| ||||| |||||||||||||||| |||  ||||||||||||||||||| ||| ||||| |  | ||||||| || ||||||||| ||| || ||    
T  30154022 tttaatctatggattttgcattgtgggtcaattcgaagaagcagttggtttgttcaatgaaatgatactcaaaaacaccaaccccaatgt-gtatacctt 30154120  T
Q  110 taacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgtt 209  Q
     || | ||||||||||||||||||||||||||||||| |||||| ||||| || ||| ||  |||||||||||||||||  |||||||||| ||||||||    
T  30154121 caatatattggttgatggtttatgtaaggaaggagaggtgaaaagagctaaaagtgttttgactgttatgataaaacaacatgtggaacctgatgttgtt 30154220  T
Q  210 acttatacttctttg 224  Q
    ||||||| |||||||    
T  30154221 acttataattctttg 30154235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 15727646 - 15727445
Alignment:
Q  10 ctttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttt 109  Q
    ||||||| || || ||||||||||| |||| ||||||||||||| ||||||||||  |||||||| | ||||||||||||| |||  || ||   |||||    
T  15727646 ctttaatttacggattttgcattgttggtcaattgaaagaagcatttggtttgttctatcaaatgctattgaaaaacatcaacccagatatttatacttt 15727547  T
Q  110 taacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgtt 209  Q
    ||||| ||||||||||| | |||||||||||||| |||| ||| |||||| ||||||| ||||||| ||||| ||| |||||||||||||| ||||||||    
T  15727546 taacatattggttgatgttctatgtaaggaaggaaagatcaaagaagctaaaaatgtgatagctgtgatgatgaaagaaggtgtggaacctgatgttgtt 15727447  T
Q  210 ac 211  Q
    ||    
T  15727446 ac 15727445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 30132229 - 30132436
Alignment:
Q  9 actttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgt-tgtaact 107  Q
    ||||||||||||||| ||| |||||| |||| |||||||||||||||| |||| || ||| |||||||||| ||||| || | ||| ||||| | || ||    
T  30132229 actttaatatatggcctttccattgtcggtcaattgaaagaagcagtttgttttttcaatgaaatgttgttaaaaaa-ataaacccgaatgtgtatacct 30132327  T
Q  108 tt---taacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatg 204  Q
    ||   ||| | |||||||||| ||||||||||| |||||||||||||||||| ||| |||| ||| ||||| |||||||||||| | || |||| |||||    
T  30132328 ttaattaatatattggttgatagtttatgtaagaaaggagagatgaaaaaagttagcaatgcgttggctgtaatgataaaacaa-gagttgaacttaatg 30132426  T
Q  205 ttgttactta 214  Q
    ||||||||||    
T  30132427 ttgttactta 30132436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 29954100 - 29954018
Alignment:
Q  9 actttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcag 91  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29954100 actttaatatatggcttttgcattgtgggacggttgaaagaagcagttaatttgttaaatcaaatgttgttgaaaaacatcag 29954018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 30053088 - 30053162
Alignment:
Q  150 aaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttg 224  Q
    |||||||||| || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30053088 aaaaaagctacaagtgtgttatctgttatgataaaacaaggcgtggaacctaatgttgttacttatacttctttg 30053162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 29954012 - 29953958
Alignment:
Q  170 agctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954012 agctgttatgataaaacaaggtgtggaacctaatgttgttacttatacttctttg 29953958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 29834746 - 29834942
Alignment:
Q  20 tggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-acttttaacacatt 118  Q
    ||||||||||||||| |||  ||||||||| ||| |||||||||| ||| |||||   ||| ||||||||| |||  || | ||| || ||||| | |||    
T  29834746 tggcttttgcattgttggtaaattgaaagatgcaattggtttgttcaataaaatgacattggaaaacatcaaccctgatat-gtatacctttaatatatt 29834844  T
Q  119 ggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttata 216  Q
    ||||||||  || |||||||||||| | |||||| |||||| ||||||||||||| | ||||| ||||||||  || |||| ||||||||||||||||    
T  29834845 ggttgatgcattttgtaaggaaggaaaaatgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcatgaaacccaatgttgttacttata 29834942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 29866180 - 29866376
Alignment:
Q  20 tggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-acttttaacacatt 118  Q
    ||||||||||||||| |||  ||||||||| ||| |||||||||| ||| |||||   ||| ||||||||| |||  || | ||| || ||||| | |||    
T  29866180 tggcttttgcattgttggtaaattgaaagatgcaattggtttgttcaataaaatgacattggaaaacatcaaccctgatat-gtatacctttaatatatt 29866278  T
Q  119 ggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttata 216  Q
    ||||||||  || |||||||||||| | |||||| |||||| ||||||||||||| | ||||| ||||||||  || |||| ||||||||||||||||    
T  29866279 ggttgatgcattttgtaaggaaggaaaaatgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcatgaaacccaatgttgttacttata 29866376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 30134781 - 30134879
Alignment:
Q  116 attggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttat 215  Q
    ||||| ||||||||||||||||||||||| | |||||| ||||||||||||| | ||| ||||| ||||||| || ||||||||||||||||||||||||    
T  30134781 attggatgatggtttatgtaaggaaggaggg-tgaaaa-agctagaaatgtgatggctattatgttaaaacatggcgtggaacctaatgttgttacttat 30134878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 30578253 - 30578033
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||| |||| |||||||||| ||||| |||||||||| |||| |||| ||  || ||||||| ||| |||||   |||||||||||   ||| ||||||     
T  30578253 tataatactctaatatatggtttttgtattgtgggtcaattggaagatgctattcgtttgtttaatgaaatgagattgaaaaacattgtcccaaatgttt 30578154  T
Q  103 taacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaa 202  Q
      | |||||| | |||| | |||||||||||||||||||| ||  |||||  || || || ||| || |||||||||||||||||| ||||| ||||| |    
T  30578153 gtagttttaatatattgatcgatggtttatgtaaggaaggtgatgtgaaaggaggtaaaagtgttttggctgttatgataaaacaaagtgtgaaacctga 30578054  T
Q  203 tgttgttacttatacttcttt 223  Q
    ||||||||||| || ||||||    
T  30578053 tgttgttacttgtagttcttt 30578033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 16702482 - 16702325
Alignment:
Q  24 ttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaacacattggttg 123  Q
    ||||||||||| |||| ||||||||||||  || |||||||  || ||||| | ||||||||||||| ||| ||||||   |||||||| | ||||||||    
T  16702482 ttttgcattgttggtcaattgaaagaagcgtttagtttgttccatgaaatggtattgaaaaacatcaacccaaatgtttatacttttaatatattggttg 16702383  T
Q  124 atggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgat 181  Q
    ||| | | |||||||| ||| |||| ||| |||||| ||||||| ||||||| |||||    
T  16702382 atgctctttgtaaggacggaaagatcaaagaagctaaaaatgtgatagctgtgatgat 16702325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 30028652 - 30028872
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||||||| || |||||||| ||||| ||||||||||  |||||||| || ||| | ||||| ||| ||||| |||||||||||||   |||  |||||     
T  30028652 tatagtacgttgatatatggtttttgtattgtgggtcagttgaaagatgctgttaggttgtttaatgaaatgatgttgaaaaacattgacccggatgttt 30028751  T
Q  103 taacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaa 202  Q
      |||||||| | |||| ||||||| || |||||| | |||||||||| ||||||||| ||| |||| | | | |||||||||   || ||  ||| |||    
T  30028752 atacttttaatatattgattgatgggttgtgtaagaatggagagatgagaaaagctaggaatttgttgggtttgatgataaaaagtggagttaaacttaa 30028851  T
Q  203 tgttgttacttatacttcttt 223  Q
    |||||||||||||| ||||||    
T  30028852 tgttgttacttatagttcttt 30028872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 29881949 - 29882160
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||||| |||||||   ||| ||||||||||| |||  ||||||||| ||| ||| |||||| ||| ||||| | ||| |||||||||  || ||||| |    
T  29881949 tatagtgctttaattagtggattttgcattgttggtaaattgaaagatgcaattgatttgtttaataaaatgatattggaaaacatcaatccgaatgt-g 29882047  T
Q  103 ta-acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaaccta 201  Q
    || || ||||  | |||||||||||| || ||||||||||||  | ||||| |||||| ||||||||||||| | ||||| ||||||||  |  |||||     
T  29882048 tatacctttagtatattggttgatggattttgtaaggaaggaagggtgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcattaaacctg 29882147  T
Q  202 atgttgttactta 214  Q
    |||||||||||||    
T  29882148 atgttgttactta 29882160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 29909105 - 29909316
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||||| |||||||   ||| ||||||||||| |||  ||||||||| ||| ||| |||||| ||| ||||| | ||| |||||||||  || ||||| |    
T  29909105 tatagtgctttaattagtggattttgcattgttggtaaattgaaagatgcaattgatttgtttaataaaatgatattggaaaacatcaatccgaatgt-g 29909203  T
Q  103 ta-acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaaccta 201  Q
    || || ||||  | |||||||||||| || ||||||||||||  | ||||| |||||| ||||||||||||| | ||||| ||||||||  |  |||||     
T  29909204 tatacctttagtatattggttgatggattttgtaaggaaggaagggtgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcattaaacctg 29909303  T
Q  202 atgttgttactta 214  Q
    |||||||||||||    
T  29909304 atgttgttactta 29909316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 24884824 - 24884874
Alignment:
Q  173 tgttatgataaaacaaggtgtggaacctaatgttgttacttatacttcttt 223  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  24884824 tgttatgataagacaagttgtggaacctaatgttgttacttatacttcttt 24884874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 24264237 - 24264050
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||||| |||||||   ||||||||||||||| |||  ||||||||| ||| |||||||||| ||| |||||   | | ||||||||| |||  |||| |    
T  24264237 tatagtgctttaattagtggcttttgcattgttggtaaattgaaagatgcaattggtttgttcaataaaatgacatcggaaaacatcaaccctgatgt-g 24264139  T
Q  103 ta-acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaagg 190  Q
    || |||||||| | |||||||||||  || ||||||||||||  | ||||| |||||| ||||| ||||||| | ||||| ||||||||    
T  24264138 tatacttttaatatattggttgatgcattttgtaaggaaggaagggtgaaagaagctaaaaatgggttagctatgatgatgaaacaagg 24264050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 29902883 - 29902983
Alignment:
Q  116 attggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttat 215  Q
    ||||||||||||||| ||||||||||||  | ||||| |||||| ||||||||||||| | ||||| ||||||||  |  ||||| | ||||||||||||    
T  29902883 attggttgatggtttttgtaaggaaggaagggtgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcatcaaacctgacgttgttacttat 29902982  T
Q  216 a 216  Q
    |    
T  29902983 a 29902983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 24272425 - 24272219
Alignment:
Q  10 ctttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actt 108  Q
    |||||||  |||| ||||||||||| |||  ||||||||| ||| |||||||||| ||| |||||   | | ||||||||| |||  |||| ||| ||||    
T  24272425 ctttaattaatggtttttgcattgttggtaaattgaaagatgcaattggtttgttcaataaaatgacatcggaaaacatcaaccctgatgt-gtatactt 24272327  T
Q  109 ttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgt 208  Q
    |||| | |||||||||||  || ||||||||||||  | ||||| |||||| ||||| ||||||| | ||||| ||||||||  |  ||||| | |||||    
T  24272326 ttaatatattggttgatgcattttgtaaggaaggaagggtgaaagaagctaaaaatgggttagctatgatgatgaaacaaggcattaaacctgacgttgt 24272227  T
Q  209 tacttata 216  Q
    ||||||||    
T  24272226 tacttata 24272219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 29348970 - 29348871
Alignment:
Q  116 attggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttat 215  Q
    |||||||||||| || ||||||||||||  | ||||| |||||| ||||||||||||| | ||||| ||||||||  |  ||||| ||||||||||||||    
T  29348970 attggttgatggattttgtaaggaaggaagggtgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcattaaacctgatgttgttacttat 29348871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 29366889 - 29366719
Alignment:
Q  20 tggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-acttttaacacatt 118  Q
    ||||||||||||||| |||  | ||||||| |||  || |||||| ||| ||||| | ||  ||||||||| ||| ||||| ||| |||||||||| |||    
T  29366889 tggcttttgcattgtcggtaaaatgaaagatgcaactgatttgtttaataaaatgatattcgaaaacatcaacccaaatgt-gtatacttttaacatatt 29366791  T
Q  119 ggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaagg 190  Q
    ||||||||| || ||||||||| ||  | ||||| |||||| ||||||| ||||| | ||||| ||||||||    
T  29366790 ggttgatggattttgtaaggaaagaaggttgaaagaagctaaaaatgtgctagctatgatgatgaaacaagg 29366719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 29073379 - 29073489
Alignment:
Q  105 acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatg 204  Q
    |||||||| | |||||||||||| || |||||||| ||| |||||||| ||| || || |||||| ||| | ||||| ||||||||  |  |||||||||    
T  29073379 acttttaatatattggttgatggattttgtaaggacggaaagatgaaagaaggtaaaactgtgtttgctatgatgatgaaacaaggcattaaacctaatg 29073478  T
Q  205 ttgttacttat 215  Q
    |||||||||||    
T  29073479 ttgttacttat 29073489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 29105952 - 29106062
Alignment:
Q  105 acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatg 204  Q
    |||||||| | |||||||||||| || |||||||| ||| |||||||| ||| || || |||||| ||| | ||||| ||||||||  |  |||||||||    
T  29105952 acttttaatatattggttgatggattttgtaaggacggaaagatgaaagaaggtaaaactgtgtttgctatgatgatgaaacaaggcattaaacctaatg 29106051  T
Q  205 ttgttacttat 215  Q
    |||||||||||    
T  29106052 ttgttacttat 29106062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 29928900 - 29928998
Alignment:
Q  116 attggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttactta 214  Q
    |||||||||||| || ||||||||||||  | ||||| |||||| ||||||||||||| | ||||| ||||||||  |  ||||| |||||||||||||    
T  29928900 attggttgatggattttgtaaggaaggaagggtgaaagaagctaaaaatgtgttagctatgatgatgaaacaaggcattaaacctgatgttgttactta 29928998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 25450632 - 25450703
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatg 74  Q
    ||||||||||||||   ||||||||||||||| |||  ||||||||||||||||| |||||| ||| |||||    
T  25450632 tatagtactttaattcgtggcttttgcattgttggtaaattgaaagaagcagttgatttgtttaataaaatg 25450703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 24730377 - 24730431
Alignment:
Q  11 tttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgtta 65  Q
    |||||| |||||||| |||||| |||||| ||||||||| |||||||||||||||    
T  24730377 tttaatttatggcttctgcattatgggtcaattgaaagaggcagttggtttgtta 24730431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 29894169 - 29894275
Alignment:
Q  105 acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatg 204  Q
    |||||||| | |||||||||||| || |||||||| ||| |||||||| ||| || || |||||| ||| | ||||| ||||||||  |  |||||||||    
T  29894169 acttttaatatattggttgatggattttgtaaggacggaaagatgaaagaaggtaaaactgtgtttgctatgatgatgaaacaaggcattaaacctaatg 29894268  T
Q  205 ttgttac 211  Q
    |||||||    
T  29894269 ttgttac 29894275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 29897613 - 29897683
Alignment:
Q  20 tggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatca 90  Q
    ||||||||||||||| |||  ||||||||| ||| |||||||||| ||| ||||| | |||||||||||||    
T  29897613 tggcttttgcattgttggtaaattgaaagatgcaattggtttgttcaataaaatgatattgaaaaacatca 29897683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 29889139 - 29889247
Alignment:
Q  108 tttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttg 207  Q
    ||||||| | |||||||||| || ||||||||||||  | ||||| |||||| ||||||||||||| | ||||| |||| ||   |  ||| ||||||||    
T  29889139 tttaacataatggttgatggattttgtaaggaaggaagggtgaaagaagctaaaaatgtgttagctatgatgatgaaacgagacatcaaacttaatgttg 29889238  T
Q  208 ttacttata 216  Q
    |||||||||    
T  29889239 ttacttata 29889247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 29946152 - 29946207
Alignment:
Q  9 actttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgtt 64  Q
    ||||||||  ||||||||||||||||||||| |||||| || ||| ||||||||||    
T  29946152 actttaattcatggcttttgcattgtgggtcaattgaatgatgcatttggtttgtt 29946207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 44263078 - 44262857
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||| |||| ||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||     
T  44263078 tatactactctaatacatggcttttgtattgtgggtcaatttaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagcctggatgttc 44262979  T
Q  103 taacttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaa 202  Q
     ||||||||| ||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  44262978 aaacttttaatacattggttgatggtttatgtaaggaaggagaagttaaacaagctagaaatgtgttagctgttatgataaaacaaggtgtggatcctga 44262879  T
Q  203 tgttgttacttatacttctttg 224  Q
    | || ||||||||| |||||||    
T  44262878 tatttttacttatatttctttg 44262857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 44349 - 44134
Alignment:
Q  8 tactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaact 107  Q
    |||| |||||||||| ||||  ||| |||||| | ||||||||||||||||||||||||||| ||||  |||||||||| ||| ||||||||||   ||     
T  44349 tactctaatatatggtttttctattttgggtcaaatgaaagaagcagttggtttgttaaatcgaatgacgttgaaaaacgtcaaccccaatgtttacacc 44250  T
Q  108 tttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttg 207  Q
    ||||  |  ||| |||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||    
T  44249 tttagtattttgattgatgttttatgtaaggatggagaggtgaaaaaagctagaaatgtgttggctgttatgataaaacaaggcgtggaacccaatattg 44150  T
Q  208 ttacttatacttcttt 223  Q
     |||||||| ||||||    
T  44149 ctacttatagttcttt 44134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 24226349 - 24226555
Alignment:
Q  18 tatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaacacat 117  Q
    ||||| |||| |||| |||||| | ||||||||||||||||||||||||||||||||   |  |||| | ||| ||| ||| ||   |||||||  ||||    
T  24226349 tatggtttttccattttgggtcaaatgaaagaagcagttggtttgttaaatcaaatgacatctaaaaccgtcaccccgaatattcgtacttttactacat 24226448  T
Q  118 tggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttatac 217  Q
    |||| ||||| ||||||||||| |||||| | |||||||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||     
T  24226449 tggtcgatgggttatgtaaggatggagaggtcaaaaaagctagaaatgtgttggctattatgataaaacaacgtgtggaacctaatattgttacttataa 24226548  T
Q  218 ttctttg 224  Q
    |||||||    
T  24226549 ttctttg 24226555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 16350574 - 16350777
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| ||||| ||||| |||  ||| ||||| ||| || ||||||| ||| ||||| |  |||||||||||| |||  ||| |   ||||||||    
T  16350574 taatctatggattttgtattgttggtaaattcaaagatgcatttcgtttgtttaatgaaatggtaatgaaaaacatcaacccagatgcttatacttttaa 16350673  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttact 212  Q
     | ||||||||||| | | |||||||||||| |||| ||| |||||| ||||||| ||||||| ||||| ||| ||||||||||||||| |||||||||     
T  16350674 tatattggttgatgctctttgtaaggaaggaaagatcaaagaagctaaaaatgtgatagctgtgatgatgaaagaaggtgtggaacctactgttgttaca 16350773  T
Q  213 tata 216  Q
    ||||    
T  16350774 tata 16350777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 24219720 - 24219507
Alignment:
Q  3 tatagtactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttg 102  Q
    |||| ||||||||| | ||| || |||||| |||||| ||||||||| ||| ||||||||||| || ||||| | ||| ||||||||| ||| | || ||    
T  24219720 tataatactttaatttgtggtttatgcattatgggtcaattgaaagatgcaattggtttgttacataaaatgatattggaaaacatcaacccaactg-tg 24219622  T
Q  103 ta-acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaaccta 201  Q
    || || ||||  | |||||||||||  || |||||||||||| |  ||||| |||||| ||||||||| | ||| ||||| ||| ||| |||  ||||||    
T  24219621 tatacctttagtatattggttgatgcattttgtaaggaaggaaaagtgaaagaagctaaaaatgtgtttgttgtgatgatgaaaaaagatgtaaaaccta 24219522  T
Q  202 atgttgttacttata 216  Q
    |  ||||||||||||    
T  24219521 acattgttacttata 24219507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 121946 - 121743
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| ||||||||||| |||| ||||||||||||| ||||||||||  || ||||| | ||||||||||||| ||| ||| ||   |||||||     
T  121946 taatctatggattttgcattgttggtcaattgaaagaagcatttggtttgttccatgaaatgctattgaaaaacatcaacccaaatatttatacttttac 121847  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttact 212  Q
    || |||| |||||| | | || ||||||||| |||| ||| |||||| ||||||| ||||||| ||||| ||| |||| ||||| |||| |||||||||     
T  121846 catattgattgatgctctttgcaaggaaggaaagatcaaagaagctaaaaatgtgatagctgtgatgatgaaagaaggcgtggagcctactgttgttaca 121747  T
Q  213 tata 216  Q
    ||||    
T  121746 tata 121743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 136898 - 137028
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| ||||||||||| |||||||||||||||||| ||||||||||  |||||||| | ||||||||||||| ||| |||| |   ||||||||    
T  136898 taatctatggattttgcattgttggtcgattgaaagaagcatttggtttgttccatcaaatggtattgaaaaacatcaacccaaatgattatacttttaa 136997  T
Q  113 cacattggttgatggtttatgtaaggaagga 143  Q
     | ||||||||||| | | || |||||||||    
T  136998 tatattggttgatgctctttgcaaggaagga 137028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 105213 - 105081
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actttta 111  Q
    |||| ||||| ||||||||||| |||| ||||||||||||| |||||||| |  |||||||| | ||||||||||||| |||  ||| |||| |||||||    
T  105213 taatttatgggttttgcattgttggtcaattgaaagaagcatttggtttggtccatcaaatggtattgaaaaacatcaacccagatg-tgtatactttta 105115  T
Q  112 acacattggttgatggtttatgtaaggaaggaga 145  Q
    | | ||||||||||| | | ||||||||||||||    
T  105114 atatattggttgatgctctttgtaaggaaggaga 105081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 139822 - 140002
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| ||||| ||||| |||| ||| ||||| ||| || |||||||  || ||||| | ||||||||||||| ||   |||||   ||||||||    
T  139822 taatctatggattttgtattgttggtcaattcaaagatgcatttcgtttgttccatgaaatggtattgaaaaacatcaaccgagatgtttatacttttaa 139921  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgt 193  Q
     | ||||||||||| | | ||||| ||||||||  |||||  |||||  ||| ||||||| |||||||| ||| |||||||    
T  139922 tatattggttgatgctctttgtaaagaaggagatgtgaaagtagctaagaatctgttagccgttatgatgaaagaaggtgt 140002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 8519 - 8705
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| ||||| ||||| |||| ||| ||||| ||| || ||||||| ||| ||||| | ||||||||||||| ||| ||||||   ||||||||    
T  8519 taatctatggattttgtattgttggtcaattcaaagatgcatttcgtttgttcaatgaaatggtattgaaaaacatcaacccaaatgtttatacttttaa 8618  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacc 199  Q
     | ||||||||||| | | |||||||||||| | |||||| |||||| ||||||||||||| | ||| | |||||||||||| ||||    
T  8619 tatattggttgatgctctctgtaaggaaggaaaaatgaaagaagctaaaaatgtgttagctatgatggtgaaacaaggtgtgaaacc 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 20888108 - 20888292
Alignment:
Q  8 tactttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaact 107  Q
    ||||||||||||||| |||  ||||||  ||| |||||||||||||||||||||||||||  || ||||||||| ||| |||| ||| |||||| | |||    
T  20888108 tactttaatatatgggtttgacattgtcagtcaattgaaagaagcagttggtttgttaaa-gaattgttgttgagaaatatcaacccgaatgttcttact 20888206  T
Q  108 tttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtg 194  Q
    ||||  |||||||||| |||||||||||||||  | ||||| ||||||||| ||||  |||| ||| |||| ||||| | |||||||    
T  20888207 tttactacattggttg-tggtttatgtaaggagagggagattaaaaaagctggaaacatgtttgctattataataaagctaggtgtg 20888292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 31774 - 31577
Alignment:
Q  19 atggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaacacatt 118  Q
    |||| ||||||||||| |||| ||| ||||||||| ||||||||||   | ||||| | ||||||||||||| |||  || ||   ||||||| || |||    
T  31774 atggattttgcattgttggtcaattcaaagaagcatttggtttgttccgtgaaatggtattgaaaaacatcaacccagatatttatacttttagcatatt 31675  T
Q  119 ggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttacttata 216  Q
    |||||||| | ||||||||||| || |||| ||| |||||| ||||||| ||||||| ||||| ||| |||| |||||||||| | ||||||| ||||    
T  31674 ggttgatgttctatgtaaggaatgaaagatcaaagaagctaaaaatgtgatagctgtgatgatgaaagaaggcgtggaacctactattgttacatata 31577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 17250839 - 17251040
Alignment:
Q  15 atatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaaca 114  Q
    |||||||| |||||||||||||||| |||| |  ||||  |||| ||||||||| ||||| ||||||||||| | | ||| ||||||   || ||||| |    
T  17250839 atatatgggttttgcattgtgggtcaattggataaagcgtttggattgttaaatgaaatggtgttgaaaaacgtaaaccctaatgtttgtacgtttaata 17250938  T
Q  115 cattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttactta 214  Q
    ||||||||||||||||||||||||||||| |||||| | |||| | || | || | || || ||||| ||| ||||||||| |||  ||||| |||||||    
T  17250939 cattggttgatggtttatgtaaggaaggaaagatgagagaagcgaaaagtttggttgcagtgatgatgaaagaaggtgtgggaccggatgtttttactta 17251038  T
Q  215 ta 216  Q
    ||    
T  17251039 ta 17251040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 41315793 - 41316000
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actttta 111  Q
    |||||||||| ||||||||| | |||| ||||||||| ||| |||||||||| | ||||||| | ||||||||||| | ||| |  | |||| |||||||    
T  41315793 taatatatggattttgcattattggtcaattgaaagatgcatttggtttgttcagtcaaatggtattgaaaaacattaacccgagcg-tgtatactttta 41315891  T
Q  112 acacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttac 211  Q
     ||  |||||||||||| |||||||||||||| |||||||| |||||| || |||| ||||| | ||||| ||| | |||||   ||| |||||||||||    
T  41315892 ccattttggttgatggtctatgtaaggaaggaaagatgaaagaagctaaaagtgtgatagctatgatgatgaaagatggtgtattaccgaatgttgttac 41315991  T
Q  212 ttatacttc 220  Q
     || |||||    
T  41315992 ctacacttc 41316000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 5717 - 5918
Alignment:
Q  10 ctttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actt 108  Q
    ||||||| ||||| ||||||||||| |||| ||||| ||||||| ||||||||||  || ||||| | ||||||||||||| ||| |||| |||| ||||    
T  5717 ctttaatctatggattttgcattgttggtcaattgatagaagcatttggtttgttccatgaaatggtattgaaaaacatcaacccaaatg-tgtatactt 5815  T
Q  109 ttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgt 208  Q
    |||| | ||||||||||| | | |||||||||||| |  |||||  |||||  ||| ||||||| || ||||| ||| |||||||   ||| ||||||||    
T  5816 ttaatatattggttgatgctctttgtaaggaaggaaatctgaaaggagctaagaatctgttagccgtgatgatgaaagaaggtgtaataccgaatgttgt 5915  T
Q  209 tac 211  Q
    |||    
T  5916 tac 5918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 1690 - 1497
Alignment:
Q  18 tatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-acttttaacaca 116  Q
    ||||| ||||||||||| |||| | ||||||||||| ||||||||||  |  ||||| | ||||||||||||| |||  |||| ||| |||||||| | |    
T  1690 tatggattttgcattgttggtcaactgaaagaagcatttggtttgtttcacgaaatggtattgaaaaacatcaaccctgatgt-gtatacttttaatata 1592  T
Q  117 ttggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatgttgttac 211  Q
    ||||| |||| ||| |||||||||||| | | |||| |||||| ||||||| ||||| | ||||| ||| ||||||||  |||  ||||||||||    
T  1591 ttggtcgatgctttttgtaaggaaggaaacacgaaagaagctaaaaatgtgatagctatgatgatgaaagaaggtgtgataccggatgttgttac 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 43765 - 43582
Alignment:
Q  10 ctttaatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actt 108  Q
    ||||||| ||||| |||||| |||| |||| ||||| ||||||| ||||||||||  || ||||| | ||||||||||||| ||| |||| |||| ||||    
T  43765 ctttaatctatggattttgctttgttggtcaattgatagaagcatttggtttgttccatgaaatggtattgaaaaacatcaacccaaatg-tgtatactt 43667  T
Q  109 ttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgt 193  Q
    |||| | ||||||||||| | | |||||||||||| |  |||||  |||||  ||| |||||||  | ||||| |||||||||||    
T  43666 ttaatatattggttgatgctctttgtaaggaaggaaatgtgaaaggagctaagaatctgttagccatgatgatgaaacaaggtgt 43582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 50979 - 50799
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||||||||| ||||||||||| |||| | ||||| ||||| || |||||||  || ||||| | |||| |||||||  ||| ||||||   ||||||||    
T  50979 taatatatggattttgcattgttggtcaactgaaaaaagcattttgtttgttccatgaaatgctattgacaaacatccacccaaatgtttatacttttaa 50880  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgt 193  Q
     | ||||||||||| | | |||||||||||| |  |||||  |||||  ||| ||||||| |||||||| ||| |||||||    
T  50879 tatattggttgatgctctttgtaaggaaggaaatgtgaaaggagctatgaatctgttagccgttatgatgaaagaaggtgt 50799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1840 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 933 - 1114
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actttta 111  Q
    |||| ||||| | ||||||||| |||| ||| ||||||||| |||||||| |   | ||||| | ||||||||||||| |||  |||| ||| |||||||    
T  933 taatctatggatattgcattgttggtcaattcaaagaagcatttggtttgctccgtgaaatggtattgaaaaacatcaacccagatgt-gtatactttta 1031  T
Q  112 acacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtg 194  Q
    ||| ||||||||| | | |||||||||||||| |||| ||| |||||| || || | ||||||| ||||| ||| ||||||||    
T  1032 acatattggttgacgctctatgtaaggaaggaaagatcaaagaagctaaaagtgggatagctgtgatgatgaaagaaggtgtg 1114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 2755 - 2936
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgta-actttta 111  Q
    |||| ||||| | ||||||||| |||| ||| ||||||||| |||||||| |   | ||||| | ||||||||||||| |||  |||| ||| |||||||    
T  2755 taatctatggatattgcattgttggtcaattcaaagaagcatttggtttgctccgtgaaatggtattgaaaaacatcaacccagatgt-gtatactttta 2853  T
Q  112 acacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtg 194  Q
    ||| ||||||||| | | |||||||||||||| |||| ||| |||||| || || | ||||||| ||||| ||| ||||||||    
T  2854 acatattggttgacgctctatgtaaggaaggaaagatcaaagaagctaaaagtgggatagctgtgatgatgaaagaaggtgtg 2936  T

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Target: scaffold0177 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 26878 - 27065
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| |||||||| || |||| ||| ||||||||| ||||||||||  || ||||| | |||| |||||||| |||  |||||   ||||| ||    
T  26878 taatctatggattttgcatggttggtcaattcaaagaagcatttggtttgttccatgaaatggtattgacaaacatcaaccctgatgtttgtactttcaa 26977  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacct 200  Q
     | |||||| |||| | | ||||||||||||   | |||| || ||| ||||||||||||||| ||||| ||| |||| |||||||||    
T  26978 tatattggtcgatgctctttgtaaggaaggaagcacgaaagaaactaaaaatgtgttagctgtgatgatgaaagaaggcgtggaacct 27065  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 53979 - 53869
Alignment:
Q  105 acttttaacacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtggaacctaatg 204  Q
    |||||||| |||||||||||||| || ||||||||  || |||||||| ||| || || |||||| ||| | ||||| ||||||||  |  |||||||||    
T  53979 acttttaatacattggttgatggattttgtaaggacagaaagatgaaagaaggtaaaactgtgtttgctatgatgatgaaacaaggcattaaacctaatg 53880  T
Q  205 ttgttacttat 215  Q
    |||||||||||    
T  53879 ttgttacttat 53869  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 126598 - 126417
Alignment:
Q  13 taatatatggcttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaa 112  Q
    |||| ||||| ||||| ||||| |||| ||| ||||| ||  || |||||||  || ||||  | ||||||||||||| |||  |||||   ||||||||    
T  126598 taatttatggattttgtattgttggtcaattcaaagatgcgtttcgtttgttccatgaaatagtattgaaaaacatcaacccagatgtttatacttttaa 126499  T
Q  113 cacattggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtg 194  Q
     | | ||||||||| | |||||||||||||| |||||||| |||||| || |||| ||||||| ||||| ||| || |||||    
T  126498 tataatggttgatgctctatgtaaggaaggaaagatgaaagaagctaaaagtgtgatagctgtgatgatgaaagaatgtgtg 126417  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 3642572 - 3642742
Alignment:
Q  24 ttttgcattgtgggtcgattgaaagaagcagttggtttgttaaatcaaatgttgttgaaaaacatcagccccaatgttgtaacttttaacacattggttg 123  Q
    |||||| |||| |||| ||||||||||||| ||||||||||  || ||||| | |||||||| |||| |||  |||||   ||||| |  | ||||||||    
T  3642572 ttttgcgttgttggtcaattgaaagaagcatttggtttgttccatgaaatggtattgaaaaatatcaacccagatgtttatactttcagtatattggttg 3642671  T
Q  124 atggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgataaaacaaggtgtg 194  Q
    ||| | | |||||||| ||| | || | || |||||  ||| ||||||| |||||||| ||||||||||||    
T  3642672 atgctctttgtaaggatggaaatatcacaagagctaagaatatgttagccgttatgatgaaacaaggtgtg 3642742  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 15063248 - 15063183
Alignment:
Q  116 attggttgatggtttatgtaaggaaggagagatgaaaaaagctagaaatgtgttagctgttatgat 181  Q
    |||| |||||||||| |||||||||||| || ||| | |||||| ||||||||||||||| |||||    
T  15063248 attgattgatggtttttgtaaggaaggaaaggtgagagaagctaaaaatgtgttagctgtgatgat 15063183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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