View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_41 (Length: 230)
Name: NF9858_low_41
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 54608290 - 54608053
Alignment:
| Q |
1 |
agttcttgcaggatcatcctaatataataaataaataaat--------tgtagttttcagtagccagtataaagtttggggcatggagaagtctcttgtt |
92 |
Q |
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| T |
54608290 |
agttcttgcaggatcatcctaatataataaataaataaataaataaactgtagttttcagtagccagtataaagtttggggcatggagaagtctcttgtt |
54608191 |
T |
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| Q |
93 |
aattgccatccatatatctcccttggaccttggtccacttgcaagttgcaaatgatcggtacccagattcatacctagccttctctcttcttaaatacca |
192 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54608190 |
aattgctatccatatatctcccttggaccttggtccacttgcaagttgcaaatgatcggtacccagattcatacctagccttctctcttcttaaatacca |
54608091 |
T |
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| Q |
193 |
ataccaatctagcgcagcacattttgcaccaaattcac |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
54608090 |
ataccaatctagcgcagcacattttgcaccaaattcac |
54608053 |
T |
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