View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_42 (Length: 230)
Name: NF9858_low_42
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33499378 - 33499602
Alignment:
| Q |
1 |
catatggtttatttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttccatagtttgaagtaagtatgtcatgatgtatatcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
33499378 |
catatggtttatttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttccttcgtttgaagtaagtatgtcatgatgtatatcgt |
33499477 |
T |
|
| Q |
101 |
aaaatatgaagcttgtcgggatttaga-nnnnnnnnnaggcaaaacaagcttattaaccttattattaggtgaacctcttctataaatagtttggttaaa |
199 |
Q |
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| T |
33499478 |
aaaatatgaagcttgtcaggatttagatttttttattaggcaaaacaagcttattaaccttattattaggtgaacctcttctataaatagtttggttaaa |
33499577 |
T |
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| Q |
200 |
ccttata--tgtccttccctttgct |
222 |
Q |
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||||||| |||||||||||||||| |
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| T |
33499578 |
ccttatatgtgtccttccctttgct |
33499602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33486296 - 33486393
Alignment:
| Q |
1 |
catatggtttatttaaattaataaagtttactttgaaaattagtacaaatggaatatccatttccatagtttgaagtaagtatgtcatgatgtatatcgt |
100 |
Q |
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|||| ||||||||| |||| ||||| |||||||| ||||||| ||||| ||||||||||||| || ||||||||| |||||||||| |||||||| |
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| T |
33486296 |
cataaggtttatttgaattcataaaatttacttttaaaatta--acaaacggaatatccatttttatcgtttgaagt----atgtcatgatttatatcgt |
33486389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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