View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_44 (Length: 210)
Name: NF9858_low_44
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_44 |
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| [»] scaffold0071 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2500 - 2709
Alignment:
| Q |
1 |
tataataattaatataggaagatcagaaatggctagatttagtaacaatattgtttagatttctaaagacaagattgatttagtgacgatatatagatat |
100 |
Q |
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| T |
2500 |
tataataattaatataggaagatcagaaatggctagatttagtaacaatattgtttagatttctaaagacaagattgatttagtgacgatatatagatat |
2599 |
T |
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| Q |
101 |
gctcatttttcattaagtaaagtatcctgcaagagaattataatgattaactgctgaagttagactcctgcaagagaatgatctaatgtaatgagtcttt |
200 |
Q |
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| T |
2600 |
gctcatttttcattaagtaaagtatcctgcaagagaattataatgattgactgatgaagttagactcctgcaagagaatgaactaatgtaatgagtcttt |
2699 |
T |
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| Q |
201 |
gtatcctcct |
210 |
Q |
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|||||||||| |
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| T |
2700 |
gtatcctcct |
2709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 15459691 - 15459482
Alignment:
| Q |
1 |
tataataattaatataggaagatcagaaatggctagatttagtaacaatattgtttagatttctaaagacaagattgatttagtgacgatatatagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15459691 |
tataataattaatataggaagatcagaaatggctagatttagtaacaatattgtttagatttctaaagacaagattgatttagtgacgatatatagatat |
15459592 |
T |
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| Q |
101 |
gctcatttttcattaagtaaagtatcctgcaagagaattataatgattaactgctgaagttagactcctgcaagagaatgatctaatgtaatgagtcttt |
200 |
Q |
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| T |
15459591 |
gctcatttttcattaagtaaagtatcctgcaagagaattataatgattgactgatgaagttagactcctgcaagagaatgaactaatgtaatgagtcttt |
15459492 |
T |
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| Q |
201 |
gtatcctcct |
210 |
Q |
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| T |
15459491 |
gtatcctcct |
15459482 |
T |
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