View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_46 (Length: 201)
Name: NF9858_low_46
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 8252666 - 8252495
Alignment:
| Q |
14 |
ttggtgttggcctgttgttgttatttccagtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtggcagtttcaaaatagc |
113 |
Q |
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| T |
8252666 |
ttggtgttggcctgttgttgttatttccagtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtggcagtttcaaaatagc |
8252567 |
T |
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| Q |
114 |
ttttgttttgctaaaaatagcaaaaagcatcgtcaaaaagaggataagtgtagtgaaaattgggaacttcat |
185 |
Q |
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| T |
8252566 |
ttttgttttgctaaaaatagcaaaaagcatcgtcaaaaagaggataattgtagtgaaaattgggaacttcat |
8252495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 8242689 - 8242581
Alignment:
| Q |
15 |
tggtgttggcctgttgttgttatttccagtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtggcagtttcaaaatagct |
114 |
Q |
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| T |
8242689 |
tggtgttgtcatgttgttgttatttccagtatccatgattgaatctccaaacacaaacactgctggaatattagtatttggtggaagtttcaaaacagca |
8242590 |
T |
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| Q |
115 |
tttgttttg |
123 |
Q |
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| T |
8242589 |
tttgttttg |
8242581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 8270223 - 8270132
Alignment:
| Q |
30 |
gttgttatttccagtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtggcagtttcaaaatagcttttgttt |
121 |
Q |
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| T |
8270223 |
gttgttatttcctgtatccgtaattgaatctccaaacacaaacactgctggaattgaaacatttggttgaagtttgactatagcctttgttt |
8270132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 8231076 - 8230999
Alignment:
| Q |
26 |
tgttgttgttatttccagtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtggcagtt |
103 |
Q |
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| T |
8231076 |
tgttgttattgttacctgtatccacgatagaatctccaaacaccaacactgctggaactgaaacatttggtggaagtt |
8230999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 53274254 - 53274199
Alignment:
| Q |
43 |
gtatccatgattgaatctccaaatacaaacactgctggaaacgaagcatttggtgg |
98 |
Q |
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| T |
53274254 |
gtatccatgattgaatctccaaacacaaatactgctggaaatgaaacatttggtgg |
53274199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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