View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_6 (Length: 444)
Name: NF9858_low_6
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 33 - 434
Target Start/End: Complemental strand, 39998219 - 39997810
Alignment:
| Q |
33 |
gtaacattgtctgcgagaaaccttttgtgtcaaaccattcaataactcaaccnnnnnnnnnnn---cattcaataattaaccttttgattttcatattca |
129 |
Q |
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| T |
39998219 |
gtaacattgtctgcgagaaaccttttgtgtcaaaccattcaataactcaaccaaaaaaaaaaaaaacattcaataattaaccttttgattttcatattca |
39998120 |
T |
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| Q |
130 |
agtgagaataagccaggattgccaagttttgagtgttgactactttaaaaatgttaagcacgtcttaaattagcccattacttgttataggtcagtttgt |
229 |
Q |
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| T |
39998119 |
agtgagaataagccaggattgccaagttttgagtgttgactactttaaaattgttaagcacgtcttaaattagcccattacttgttataggtcaatttgt |
39998020 |
T |
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| Q |
230 |
attttgtgaggtagacatggtcatttggaaagcataacaagcattgtagtaacc---aagtatcccccgatatgtatcccgatgcgatacaaaaacaacc |
326 |
Q |
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| T |
39998019 |
attttgtgaggtagacatggtcatttggaaagcataacaagcattgtagtaaccagtaagtatcccccgatatgtatcccgatgcgatacaaaaacaacc |
39997920 |
T |
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| Q |
327 |
agggtcaata-gtatcagggtttgt-tcccaaatgatcatgtatcgcaagcgtatatcgctagtgtatcccatgtatcctgattcaatctagtatcttac |
424 |
Q |
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| T |
39997919 |
agggtcgatacgtatcatagtttgtatcccaaatgatcatgtatcgcaagcgtatatcattagtgtatcccatgtatcctgattcaatctagtatcttac |
39997820 |
T |
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| Q |
425 |
gatacctatg |
434 |
Q |
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| T |
39997819 |
gatacctatg |
39997810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 24084960 - 24084927
Alignment:
| Q |
398 |
gtatcctgattcaatctagtatcttacgatacct |
431 |
Q |
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| T |
24084960 |
gtatcccgattcaatctagtatcttacgatacct |
24084927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 54226985 - 54226945
Alignment:
| Q |
389 |
gtatcccatgtatcctgattcaatctagtatcttacgatac |
429 |
Q |
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| T |
54226985 |
gtatcccatgtatcccgattcaatctagtatcctacaatac |
54226945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 1813050 - 1813008
Alignment:
| Q |
387 |
gtgtatcccatgtatcctgattcaatctagtatcttacgatac |
429 |
Q |
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| T |
1813050 |
gtgtatcccatgtatcctgattcaatctagtatcctacgatac |
1813008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 9233089 - 9233049
Alignment:
| Q |
389 |
gtatcccatgtatcctgattcaatctagtatcttacgatac |
429 |
Q |
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| T |
9233089 |
gtatcccatgtatcccgattcaatctagtatcctacaatac |
9233049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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