View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_7 (Length: 436)
Name: NF9858_low_7
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_7 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 136 - 387
Target Start/End: Complemental strand, 31152492 - 31152242
Alignment:
| Q |
136 |
atgggttccagccatagtaaggcactatgagaaatgttgaaatttcttctcctacatgcctatagaaagtagcttgtggtgcttaacttcaatttgtgtc |
235 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31152492 |
atgggttccagctatagtaaggcactatgagagatgttgaaatttcttctcctacatgcctatagaaagtagcttgcggtgcttaacttcaatttgtgtc |
31152393 |
T |
|
| Q |
236 |
agaagcaatttgaaagcatggcaaatggtagtacaaaagtcaaggacggtggagtatagtggttgaatgtgagaaccaagcattcaatgcttgtggttca |
335 |
Q |
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|||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31152392 |
agaagcaatttgaaagcacggcagatggtagttcaaaagtcaaggacggttgagtatagtggttgaatgtgagaaccaagcattcaatgtttgtggttca |
31152293 |
T |
|
| Q |
336 |
aatctctctataaatagagaagagcttcagcaaagcataccacaccacaaca |
387 |
Q |
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| T |
31152292 |
aatctctctataaatagagaagagcttcagcaaagca-atcacaccacaaca |
31152242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22981898 - 22981841
Alignment:
| Q |
1 |
atgacaatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttg |
58 |
Q |
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|||| ||||||||||| |||||||||||| ||||| ||||||| || || |||||||| |
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| T |
22981898 |
atgagaatggagcagacatgatgacaaaacctctaccaaaagaaaagattgagttttg |
22981841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23806510 - 23806567
Alignment:
| Q |
1 |
atgacaatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttg |
58 |
Q |
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|||| ||||||||||| |||||||||||| ||||| ||||||| || || |||||||| |
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| T |
23806510 |
atgagaatggagcagacatgatgacaaaacctctaccaaaagaaaagattgagttttg |
23806567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 33811160 - 33811307
Alignment:
| Q |
1 |
atgacaatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |
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| T |
33811160 |
atgacaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaa |
33811259 |
T |
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| Q |
101 |
ggatagtttcctctttggctggagggggagaattgatgggttccagcca |
149 |
Q |
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||||||||||| ||||||||||||||||||||||| ||| ||||||||| |
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| T |
33811260 |
ggatagtttcc-ctttggctggagggggagaattgttggtttccagcca |
33811307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 33816078 - 33816225
Alignment:
| Q |
1 |
atgacaatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |
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| T |
33816078 |
atgacaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaa |
33816177 |
T |
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| Q |
101 |
ggatagtttcctctttggctggagggggagaattgatgggttccagcca |
149 |
Q |
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||||||||||| ||||||||||||||||||||||| ||| ||||||||| |
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| T |
33816178 |
ggatagtttcc-ctttggctggagggggagaattgttggtttccagcca |
33816225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 436
Target Start/End: Original strand, 33807820 - 33807947
Alignment:
| Q |
307 |
agaaccaagcattcaatgcttgtggttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcactcacataga |
406 |
Q |
| |
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||||||||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
33807820 |
agaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacataga |
33807917 |
T |
|
| Q |
407 |
gttgagcgaaaaatagagagttcctcataa |
436 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
33807918 |
gttgagagaaaaatagagagttcctcataa |
33807947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 436
Target Start/End: Original strand, 33811474 - 33811601
Alignment:
| Q |
307 |
agaaccaagcattcaatgcttgtggttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcactcacataga |
406 |
Q |
| |
|
||||||||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
33811474 |
agaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacataga |
33811571 |
T |
|
| Q |
407 |
gttgagcgaaaaatagagagttcctcataa |
436 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
33811572 |
gttgagagaaaaatagagagttcctcataa |
33811601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 436
Target Start/End: Original strand, 33816392 - 33816519
Alignment:
| Q |
307 |
agaaccaagcattcaatgcttgtggttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcactcacataga |
406 |
Q |
| |
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||||||||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||| |
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| T |
33816392 |
agaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacataga |
33816489 |
T |
|
| Q |
407 |
gttgagcgaaaaatagagagttcctcataa |
436 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
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| T |
33816490 |
gttgagagaaaaatagagagttcctcataa |
33816519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 436
Target Start/End: Original strand, 50602993 - 50603135
Alignment:
| Q |
298 |
ttgaatgtgagaaccaagcattcaatgcttgtggttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacat-----aatc |
392 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
50602993 |
ttgaaagtgtgaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagca-aacacaccacaacatagcacaatc |
50603091 |
T |
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| Q |
393 |
ctcactcacatagagttgagcgaaaaatagagagttcctcataa |
436 |
Q |
| |
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|||||||||| ||||||||| |||||||||| |||||||||||| |
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| T |
50603092 |
ctcactcacacagagttgagagaaaaatagaaagttcctcataa |
50603135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 54967961 - 54967873
Alignment:
| Q |
9 |
ggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
97 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| | ||||| || | |||||||||||||| ||||| |
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|
| T |
54967961 |
ggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaattaatc |
54967873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 24380018 - 24379927
Alignment:
| Q |
6 |
aatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
97 |
Q |
| |
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|||||||| || |||||||||||| |||||||||||||||| ||||||||||| ||| | ||||| || | |||||||||||||||||||| |
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| T |
24380018 |
aatggagccgacatgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
24379927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4836303 - 4836159
Alignment:
| Q |
1 |
atgacaatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaa |
100 |
Q |
| |
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|||| ||||||||||| |||||||||||| | ||| | |||||||| ||||||||||| ||| | ||||| || || | ||||||||||||||||| ||| |
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| T |
4836303 |
atgagaatggagcagacatgatgacaaaaccgctaccgaaagagaagatagagttttgcaaacaagctgctggaatggtagcaaccccaaactaat-taa |
4836205 |
T |
|
| Q |
101 |
ggatagtttcctctttggctggagggggagaattgatgggttccagccat |
150 |
Q |
| |
|
|| |||| || |||||||||||||||||||| |||| ||||||||| |
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| T |
4836204 |
gg---cattcccctatggctggagggggagaattg-tggggtccagccat |
4836159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2178 - 2274
Alignment:
| Q |
1 |
atgacaatggagcagatatgatgacaaaagctctatcaaaagagaaaatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
97 |
Q |
| |
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|||| ||||||||||| |||||||| ||| ||||| |||||||||| || |||||||| ||| | ||||| || | |||||||||||||||||||| |
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| T |
2178 |
atgagaatggagcagacatgatgaccaaacctctaccaaaagagaagattgagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 25003511 - 25003456
Alignment:
| Q |
79 |
cagcaaccccaaactaatctaaggatagtttcctctttggctggagggggagaattg |
135 |
Q |
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|||||||||||||||||| | | |||| ||||| |||||||||||||| |||||||| |
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| T |
25003511 |
cagcaaccccaaactaatttgaagatattttcc-ctttggctggagggagagaattg |
25003456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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