View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_8 (Length: 395)
Name: NF9858_low_8
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 35650636 - 35651015
Alignment:
| Q |
5 |
agtttggtgttaaagaagagaagagtgtaagttata----ttataggcaaatgaggcttgtgtcttttatagatgaaatgtggcgcattgtagcaacatt |
100 |
Q |
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| T |
35650636 |
agtttggtcttaaagaagagaagagtgtaagttatatatattataggcaaatgaggcttgtgtcttttatagatgaaatgtggcgcattgtagcaacatt |
35650735 |
T |
|
| Q |
101 |
attttagtcacaaagtctacacacaaaagacatttgcattttacaagcttgtcattccctaagccattaacttacctatatgaactattttaaacagtnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35650736 |
attttagtcacaaagtctacacacaaaagacatttgcattttacaagcttgtcattccctaagccattaacttacctatatgaactattttaaacagtaa |
35650835 |
T |
|
| Q |
201 |
nnnnnnttaaaagaatcatagcaaatatttgatcaatcttcatgtgattgtgaattagtagaatgaaaaggacatgtggacacctcacatgtgcattccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35650836 |
aaaaaattaaaagaatcatagcaaatatttgatcaatcttcatgtgattgtgaagtagtagaatgaaaaggacatgtggacacctcacatgtgcattccc |
35650935 |
T |
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| Q |
301 |
atgtgcacctttggagtaactaacttagagagacaaaagaacatggaaacaccataaactaacctatcacccttagctct |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35650936 |
atgtgcacctttggagtaactaacttagagagacaaaagaacatggaaacaccataaactaacctatcacccttagctct |
35651015 |
T |
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