View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9858_low_9 (Length: 392)
Name: NF9858_low_9
Description: NF9858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9858_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 47 - 382
Target Start/End: Complemental strand, 29313048 - 29312714
Alignment:
| Q |
47 |
atatgcttaaagcaaacattatcacaaagattgtaaaatttaacattgacaaaagctacattccttgttctttcgagaagtggagtagattatcaattac |
146 |
Q |
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| T |
29313048 |
atatgcttaaagcaaacattatcacaaagattgtaaaatttaacattgacaaaagctacattccttgttctttcgagaagtggagtagatcatcaattac |
29312949 |
T |
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| Q |
147 |
aattacaaaatgagttctgaagtgaaatctcattttgtataacaggaaatcaatgaactaactttgaatgaattgaaggnnnnnnntcaatatcctctgg |
246 |
Q |
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| T |
29312948 |
aattacaaa-tgagttctgaagtgaaatctcattttgtataacaggaaatcaatgaactaactttgaatgaattgaaggaaaaaaatcaatatcctctgg |
29312850 |
T |
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| Q |
247 |
aaagcaaaattgaaaccaagaaatatctcaagaatcaaaacctcaacaaagcgtggatggagcaacaaaaattcagattgcaaaagctaataaaagaata |
346 |
Q |
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| T |
29312849 |
aaagcaaaattgaaaccaagaaatatctcaagaatcaaaacctcaacaaagcgtggatggagcaacaaaaattcagattgcaaaagctaataaaagaata |
29312750 |
T |
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| Q |
347 |
aaatcatatagaactacaatgaacacaatacctttg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29312749 |
aaatcatatagaactacaatgaacacaatacctttg |
29312714 |
T |
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