View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9859_low_11 (Length: 212)
Name: NF9859_low_11
Description: NF9859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9859_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 47054686 - 47054744
Alignment:
| Q |
135 |
tacaaaataatgttaatatatttgtattttcaactttaaattgaatggtacatgggccg |
193 |
Q |
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| T |
47054686 |
tacaaaataatgttaatatatttgtattttcaactttaaattgaatggtacatgggccg |
47054744 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 47054566 - 47054621
Alignment:
| Q |
15 |
cagagatctgtccttctgcaaaaacacaagaatgaaatttgatcaaatgaaatgat |
70 |
Q |
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| T |
47054566 |
cagagatctgtccttctgcaaaaacacaagaatgaaatttgatcaaatgaaatgat |
47054621 |
T |
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