View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9859_low_2 (Length: 612)
Name: NF9859_low_2
Description: NF9859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9859_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 17 - 605
Target Start/End: Complemental strand, 45715544 - 45714956
Alignment:
| Q |
17 |
aatggaaaaccttgaattgttgacaaagcttgatctttcttataaccctttaaggtgttctattccaaagtttattgggaagttgaaaaatttggaaatt |
116 |
Q |
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| T |
45715544 |
aatggaaaaccttgaattgttgacaaagctcgatctttcttataaccctttaaggtgttctattccaaagtttattgggaagttgaaaaatttggaaatt |
45715445 |
T |
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| Q |
117 |
ttgaaccttgttttttctgagcttaatgggtcagttccatccgagcttggaaattgttcaaatttgactaatgtgatgctttcctttaattcattatctg |
216 |
Q |
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| T |
45715444 |
ttgaaccttgttttttctgagcttaatgggtcagttccatccgagcttggaaattgttcaaatttgactaatgtgatgctttcttttaattcattatctg |
45715345 |
T |
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| Q |
217 |
ggtcattgcctcaagagctttctatgcttcctattaagacattttcagctgaaaagaatcttcttcatggtcctttgccttcttggcttgggaagtggag |
316 |
Q |
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| T |
45715344 |
ggtcattgcctcaagagctttctatgcttcctattaagacattttcagctgaaaagaatcttcttcatggtcctttgccttcttggcttgggaagtggag |
45715245 |
T |
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| Q |
317 |
taatattgattctcttttgctttcggcaaaccggttttcaggtgtgattccacctgagcttgggaattgttctgtgatggagcatctcagtttgagtagt |
416 |
Q |
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| T |
45715244 |
taatattgattctcttttgctttcggcaaaccggttttcaggtgtgattccacctgagcttgggaattgttctgtgatggagcatctcagtttgagtagt |
45715145 |
T |
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| Q |
417 |
aatttgttgacaggctctatacctgaggagctttgtaatgccgcatcgatgtcggagattgatcttgatgataacaaccttagtggtacaattgagaaag |
516 |
Q |
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| T |
45715144 |
aatttgttgacaggctctatacctgaggagctttgtaacgccgcatcgatgtcggagattgatcttgatgataacaaccttagtggtacaattgagaaag |
45715045 |
T |
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| Q |
517 |
cttttgtgaattgtaagaaccttactcaattggttttgatgaataatcggattgttggttctataccacggtacctttctgagcttcct |
605 |
Q |
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| T |
45715044 |
cttttgtgaattgtaagaaccttactcaattggttttgatgaataatcagattgttggttctataccacagtacctttctgagcttcct |
45714956 |
T |
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