View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9859_low_3 (Length: 470)
Name: NF9859_low_3
Description: NF9859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9859_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33866373 - 33866047
Alignment:
| Q |
1 |
taatttactgattgtataatctgaattgcctgatcttgaattaatggtcaagatatataaaactatgtgtaacggcatgtattttttactgcaggaaatt |
100 |
Q |
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| T |
33866373 |
taatttactgattgtataatctgaattgcctgatcttggattaatggtcaagatatataaaactatgtgtaacggcacgtattttttactgcaggaaatt |
33866274 |
T |
|
| Q |
101 |
gtcatccctcatctctctttctctttcacacacaataatatcatgattaattatgtctttttcaggaagatcttataattgtgactcgtgataatgtcat |
200 |
Q |
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| T |
33866273 |
gtcatccctcatctctctttctctttcacacacaataatatcatgatta----tgtctttttcaggaagatcttataattgtgactcgtgataatgtcat |
33866178 |
T |
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| Q |
201 |
ttttgaactacgtggtagtgctaactaccatactttagcaattttaaaaactagacgagtcccataaatataaatttacaaatgtgatatttattgttga |
300 |
Q |
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| T |
33866177 |
ttttgaactacgtggtagtgctaactaccatactttagcaattttaaaaactagatgagtcccataaatataaatttacaaatgtgatatttattgttga |
33866078 |
T |
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| Q |
301 |
atggagatagtgtcgtaaaatacatacacac |
331 |
Q |
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| T |
33866077 |
atggagatagtgtcgtaaaatacacacacac |
33866047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 33855696 - 33855567
Alignment:
| Q |
19 |
atctgaattgcctgatcttgaattaatggtcaagatatataaaactatgtgtaacggcatgtattttttactgcaggaaattgtcatccctcatctctct |
118 |
Q |
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| T |
33855696 |
atctgatttgcctgatctcggattaatggtcaagatatataaaactatgtgtaacggcatgtattttttactgcaggaaattgtcatccctcgtctctct |
33855597 |
T |
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| Q |
119 |
ttctctttcacacacaataatatcatgatt |
148 |
Q |
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| T |
33855596 |
ttctctttcacacacaataatatcatgatt |
33855567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 33866005 - 33865927
Alignment:
| Q |
349 |
ctcaaaagtaaaaaatatgaaaatacgtaaaagatttacctgctacatgcaaacaataatattttattcaaaagagttta |
428 |
Q |
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| T |
33866005 |
ctcaaaagtaaaaaatatgaaaatacgtaaaagatttacctgctacatgcaaacaataata-tttattcaaaagagttta |
33865927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 33865904 - 33865870
Alignment:
| Q |
426 |
ttacggaattacggtactggtatcttctttctctg |
460 |
Q |
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| T |
33865904 |
ttacggaattacggtactggtatcttctttctctg |
33865870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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