View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9859_low_4 (Length: 410)
Name: NF9859_low_4
Description: NF9859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9859_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 31524263 - 31523873
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524263 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
31524164 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524163 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
31524064 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaatgaactagatcaacatcacagaaaaatatatgtacctacatacaaaatgtatttgaattttgattagatt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524063 |
atacacagataatgaaatatggaaggtgaatgaactagatcaacatcacagaaaaatatatgtacctacatacaaaatgtatttgaattttgattagatt |
31523964 |
T |
|
| Q |
301 |
tgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31523963 |
tgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttg |
31523873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5316144 - 5316374
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
5316144 |
ggaaggactggtactggaaaaagtacacttataagtgccttgtttggcttagttgagccttcaaaaggtgatattctcatagatgggataaacatatgct |
5316243 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
5316244 |
caatcgggttgaaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcct |
5316343 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaat |
231 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
5316344 |
gtactcagatgatgaaatatggaaggtgaat |
5316374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5279980 - 5279743
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | || ||||| ||||||||||||| |
|
|
| T |
5279980 |
ggaaggactggaagcggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcaaaaggtgatattcttattgatggaattaacatatgct |
5279881 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
| |||||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||| ||||||| |
|
|
| T |
5279880 |
caatcgggttaaaggatttgagaacaaagctaagcatcattccgcaagaaccaacacttttcaaaggcagcattaggacaaatctggaccctctaggcct |
5279781 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaatgaactag |
238 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5279780 |
gtactcagatgatgaaatatggaaggtgaatgaactag |
5279743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5287683 - 5287453
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
5287683 |
ggaaggactggaagtgggaaaagcacactgattagtgctttgtttcgcttagttgagccttcaagaggtgatattcttatagatggggttaacatatgct |
5287584 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
| ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
5287583 |
caatcggattgaaggatttgagaacaaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattagaacaaacctggaccctctaggcct |
5287484 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaat |
231 |
Q |
| |
|
|| |||||| |||||||||||||||||||| |
|
|
| T |
5287483 |
gtattcagatgatgaaatatggaaggtgaat |
5287453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 15128044 - 15128276
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
15128044 |
ggaaggaccggaagtggaaaaagtacactgattagtgctttgtttcgcttagttgagccttcaagaggtgatattcttattgatgggataaacatttgct |
15128143 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
| || || ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
15128144 |
caatgggattgaaggatttgagaatgaagctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctaggcct |
15128243 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaatga |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
15128244 |
gtactcagatgatgaaatatggaaggtgaatga |
15128276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5309470 - 5309704
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5309470 |
ggaaggactggaagtggaaaaagtacactgattagtgctttgtttcgcttagttgagccatcaagaggtgatattctcatagatgggattaacatatgct |
5309569 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
| ||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||| || ||| ||||||| |
|
|
| T |
5309570 |
caatcggattgagggatttgagaacgaagctaagcatcattccgcaagaaccaacacttttcaagggaagcatcaagacaaacctggatcctctaggcct |
5309669 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaatgaac |
235 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||| |
|
|
| T |
5309670 |
gcactcagacgatgaaatatggaaagtgagtgaac |
5309704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14946993 - 14946757
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||| || ||||||||| | || |||||||| ||||| |||| |
|
|
| T |
14946993 |
ggaaggacgggaagtggaaaaagtacactgattagcgctttgtttcgcttagttgagccttcaagcggtgatattcttattgatgggataaacatttgct |
14946894 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttaggcct |
200 |
Q |
| |
|
| || |||||||| ||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
14946893 |
caatggggttgaaggatttgagaatgaggctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctaggcct |
14946794 |
T |
|
| Q |
201 |
atactcagataatgaaatatggaaggtgaatgaacta |
237 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
14946793 |
gtactcagatgatgaaatatggaatgtaaatgaacta |
14946757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 5279655 - 5279577
Alignment:
| Q |
312 |
tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
390 |
Q |
| |
|
|||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5279655 |
tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt |
5279577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 15128381 - 15128460
Alignment:
| Q |
312 |
tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttg |
391 |
Q |
| |
|
|||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| | |||||| |
|
|
| T |
15128381 |
tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttg |
15128460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 5316437 - 5316519
Alignment:
| Q |
308 |
tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
390 |
Q |
| |
|
|||||||||||| | | |||||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5316437 |
tatatttaggctgtaaaaaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt |
5316519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 14946681 - 14946588
Alignment:
| Q |
289 |
tttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggt |
382 |
Q |
| |
|
|||||||| ||||| || ||| |||||||| | ||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
14946681 |
tttgattatatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatctgcaagctaccaagtctcttggactcttctggt |
14946588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 5309804 - 5309871
Alignment:
| Q |
323 |
gagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
390 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
5309804 |
gagaaatgtcagcttaaggaaacaatcagcaagctatcaagtctcttggactcttctggtaagtcttt |
5309871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 5287391 - 5287309
Alignment:
| Q |
308 |
tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt |
390 |
Q |
| |
|
|||||||||||| | || |||||||| || |||||||||||||||| |||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
5287391 |
tatatttaggctgtagaaaaatgtcagcttaaggaaacaatcagcaagctaccaaatctcttagactcttctggtaagtcttt |
5287309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 5348726 - 5348560
Alignment:
| Q |
1 |
ggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacatatgct |
100 |
Q |
| |
|
||||| ||||| ||||| |||| |||||| ||||||| |||||||| || || || ||| | || ||||| || | |||||||| |||||||||||| |
|
|
| T |
5348726 |
ggaagaactgggagtgggaaaacaacacttttaagtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgct |
5348627 |
T |
|
| Q |
101 |
cgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaaggg |
167 |
Q |
| |
|
| || || | |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
5348626 |
caattggtcttaaagatttaagaatgaagctaagtatcatccctcaagaaccaattcttttcaaggg |
5348560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University