View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9859_low_5 (Length: 287)
Name: NF9859_low_5
Description: NF9859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9859_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 31631451 - 31631193
Alignment:
| Q |
13 |
gagaggtggatagtaactactatcattttatgatcatgactcatgaaactgtaagccacatctcagaatatgagtaaacagatatcagttttgcagctgt |
112 |
Q |
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| T |
31631451 |
gagaggtggatagtaacaagtatcatattatcgtcatgactcacgaaactgtaagccacagctcagaatatgaataaacagatatcagttttgcagctgt |
31631352 |
T |
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| Q |
113 |
tgccataatcccaaagatttgcacagactgcacaaggttttaaactacctctccacaaaacatacattttctgactaagtttatgaccttatatgcccag |
212 |
Q |
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| T |
31631351 |
tgccataatcgctaagatttgcacagactgcaaaaggttctaaactatgtttccacaaaacattcattttctgactaaatttatgaccttatatgaccag |
31631252 |
T |
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| Q |
213 |
atgaatctatacacaaccgaactttaataaacatgatagtgtgaaagaaatcataaattt |
272 |
Q |
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| T |
31631251 |
ttgaatctataaacaaccaaac-ttaataaacatgatagtgcaaaagaaatcataaattt |
31631193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 31657717 - 31657574
Alignment:
| Q |
79 |
aatatgagtaaacagatatcagttttgcagctgttgccataatcccaaagatttgcacagactgcacaaggttttaaactacctctccacaaaacataca |
178 |
Q |
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| T |
31657717 |
aatatgaataaacagatatcagttttccaattgttgccataacttcaaagaattgcaaagattgcacaaggctgtaaactacctctccacacaacatgca |
31657618 |
T |
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| Q |
179 |
ttttctgactaagtttatgaccttatatgcccagatgaatctata |
223 |
Q |
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| T |
31657617 |
ttttctaactacattaatgaccttata-ggccagttgaatctata |
31657574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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