View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9859_low_9 (Length: 235)
Name: NF9859_low_9
Description: NF9859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9859_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 33866571 - 33866353
Alignment:
| Q |
17 |
aggaataatattaaaatatctacagaccagcttaatcaatttagtactttctttacctttcaaccattccccatattacatcactcataagctccatctc |
116 |
Q |
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| T |
33866571 |
aggaataatattaaaatatctacagaccagcttaatcaatttagtactttctttacctttcaaccattccccatattacatcactcataagctccatctc |
33866472 |
T |
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| Q |
117 |
tcatatttgggttctttgttgtaaatgcatgagtgcatgcatgacacacttaaatctaaatagttcgatctaaaatcaatgtcgtgatcattaataatta |
216 |
Q |
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| T |
33866471 |
tcatatttgggttctttgttgtaaatgcatgagtgcatgcatgacacacttaaatctaaatagttcgatctaaaatcaatgtcgtgatcattaataatta |
33866372 |
T |
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| Q |
217 |
atttactgattgtataatc |
235 |
Q |
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| T |
33866371 |
atttactgattgtataatc |
33866353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 33855874 - 33855711
Alignment:
| Q |
44 |
cagcttaatcaatttagtactttctttacctttcaaccattccccatattacatcactcataagctccatctctcatatttgggttctttgttgtaaatg |
143 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
33855874 |
cagcttaatcaatttagtactttctttacctttcaatcattctccatgttacatcactcatgagctccatatctcatatttggattctttgttgtaaatg |
33855775 |
T |
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| Q |
144 |
catgagtgcatgcatgacacacttaaatctaaatagttcgatctaaaatcaatgtcgtgatcattaataattaat |
218 |
Q |
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| T |
33855774 |
catga-------cacgtca----taaatctatatagttatatctaaaatcaatgtcgtgatcattaataattaat |
33855711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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