View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9860_high_15 (Length: 233)

Name: NF9860_high_15
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9860_high_15
NF9860_high_15
[»] chr4 (4 HSPs)
chr4 (15-222)||(44588614-44588821)
chr4 (46-126)||(3017390-3017470)
chr4 (24-148)||(44618477-44618601)
chr4 (20-93)||(42906755-42906827)
[»] chr2 (2 HSPs)
chr2 (15-75)||(11085818-11085878)
chr2 (114-154)||(27920644-27920685)
[»] chr1 (7 HSPs)
chr1 (20-167)||(19204078-19204226)
chr1 (20-167)||(19206488-19206636)
chr1 (20-148)||(19214541-19214669)
chr1 (15-69)||(37231681-37231735)
chr1 (114-148)||(49284359-49284393)
chr1 (114-154)||(19797039-19797080)
chr1 (120-160)||(4087989-4088029)
[»] chr8 (2 HSPs)
chr8 (114-151)||(4585592-4585629)
chr8 (15-88)||(26677354-26677427)
[»] chr5 (2 HSPs)
chr5 (114-143)||(12807983-12808012)
chr5 (114-142)||(12257585-12257613)
[»] chr3 (2 HSPs)
chr3 (114-142)||(10017186-10017214)
chr3 (114-142)||(10254641-10254669)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 44588614 - 44588821
Alignment:
Q  15 gagacacaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctttgttatttatacactttttgcgtcaa 114  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||    
T  44588614 gagaaacaaatgaatagttagagttaagaacaaaatttacgtgaatttttttatgtgttttctgtttgattctttgttatttatacactttttgtgtcaa 44588713  T
Q  115 taacaaactttgaaaaaattatggatttatgaaatcatgggtagttttgttagtaatcatnnnnnnnncacgtaagtgtaagcctagaaggatatacctg 214  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||        ||| |||||||||||||||||||||| ||||     
T  44588714 taacaaactttgaaaaaattatagatttataaaatcatggatagttttgttagtaatcataaaaaaaacacctaagtgtaagcctagaaggataaacctt 44588813  T
Q  215 atgtccat 222  Q
    ||||||||    
T  44588814 atgtccat 44588821  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 3017470 - 3017390
Alignment:
Q  46 aaaacttacgtgaattttcttatgtgttttctgtatggttctttgttatttatacactttttgcgtcaataacaaactttg 126  Q
    |||||||| ||||||||||||||||||||| |||||| |||||  |||   ||||| |||||| | |||||| ||||||||    
T  3017470 aaaacttatgtgaattttcttatgtgttttttgtatgcttcttatttaaaaatacattttttgtgacaataaaaaactttg 3017390  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 44618601 - 44618477
Alignment:
Q  24 ataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctttgttatttatacactttttgcgtcaataacaaact 123  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| ||| ||| |   |||||||| |   ||||||||||| ||||| |    ||||||||     
T  44618601 ataaatagttagaattaaaaacaaaacttatgtgaattttctcatgggttattcatatggttcgtatctatttatacaccttttgtgcttgtaacaaacg 44618502  T
Q  124 ttgaaaaaattatggatttatgaaa 148  Q
    ||||||||||| |  ||||||||||    
T  44618501 ttgaaaaaattgtacatttatgaaa 44618477  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 42906755 - 42906827
Alignment:
Q  20 acaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctttgtta 93  Q
    ||||| ||||||||||| ||||| |||||||||| || ||||| ||||| ||||||| ||||| ||||| ||||    
T  42906755 acaaacaaatagttagaattaaggacaaaacttatgtaaatttccttatatgttttc-gtatgattcttagtta 42906827  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 11085878 - 11085818
Alignment:
Q  15 gagacacaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgtttt 75  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11085878 gagaaacaaataaatagttagaattaaggacaaaacttacgtgaattttcttatgtgtttt 11085818  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 27920644 - 27920685
Alignment:
Q  114 ataacaaactttgaaaaaattatggattt-atgaaatcatgg 154  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  27920644 ataacaaactttgaaaaaattatggatttgaggaaatcatgg 27920685  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 19204226 - 19204078
Alignment:
Q  20 acaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctttgttatttatacactttttgcgtcaataaca 119  Q
    ||||||||||||||||| | ||  ||| |||||| |||||||| ||||||||||||  ||||| |||||   ||   |||||||||||| | | |||| |    
T  19204226 acaaataaatagttagaatcaatgacacaacttatgtgaatttccttatgtgtttttcgtatgattcttgcctaaaaatacactttttgtgactataata 19204127  T
Q  120 aactttgaaaaaattatggatttatg-aaatcatgggtagttttgttag 167  Q
    |||||||| |||||| || ||||||| |||||||| ||||||| |||||    
T  19204126 aactttgagaaaattgtgaatttatgaaaatcatgagtagtttagttag 19204078  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 19206636 - 19206488
Alignment:
Q  20 acaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctttgttatttatacactttttgcgtcaataaca 119  Q
    ||||||||||||||||| | ||  ||| |||||| |||||||| ||||||||||||  ||||| |||||   ||   |||||||||||| | | |||| |    
T  19206636 acaaataaatagttagaatcaatgacacaacttatgtgaatttccttatgtgtttttcgtatgattcttgcctaaaaatacactttttgtgactataata 19206537  T
Q  120 aactttgaaaaaattatggatttatg-aaatcatgggtagttttgttag 167  Q
    |||||||| |||||| || ||||||| |||||||| ||||||| |||||    
T  19206536 aactttgagaaaattgtgaatttatgaaaatcatgagtagtttagttag 19206488  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 19214669 - 19214541
Alignment:
Q  20 acaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctttgttatttatacactttttgcgtcaataaca 119  Q
    ||||||||||||||||| | ||| ||| |||||| |||||||||||||| ||||||  ||||| |||||   ||   |||||||||||| | | |||| |    
T  19214669 acaaataaatagttagaatcaaggacacaacttatgtgaattttcttatctgtttttcgtatgattcttgcctaaaaatacactttttgtgactataata 19214570  T
Q  120 aactttgaaaaaattatggatttatgaaa 148  Q
    |||||||| |||||| || ||||||||||    
T  19214569 aactttgagaaaattgtgaatttatgaaa 19214541  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 37231681 - 37231735
Alignment:
Q  15 gagacacaaataaatagttagagttaagaacaaaacttacgtgaattttcttatg 69  Q
    |||| ||||||||||||||| | ||||| |||||||||| || ||||||||||||    
T  37231681 gagaaacaaataaatagttaaaattaaggacaaaacttatgtaaattttcttatg 37231735  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 49284393 - 49284359
Alignment:
Q  114 ataacaaactttgaaaaaattatggatttatgaaa 148  Q
    |||||||||||||||||||||||||||||| ||||    
T  49284393 ataacaaactttgaaaaaattatggatttaagaaa 49284359  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 19797080 - 19797039
Alignment:
Q  114 ataacaaactttgaaaaaattatggattt-atgaaatcatgg 154  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  19797080 ataacaaactttgaaaaaattatggatttgaggaaatcatgg 19797039  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 4088029 - 4087989
Alignment:
Q  120 aactttgaaaaaattatggatttatgaaatcatgggtagtt 160  Q
    |||||||||||||||||||||||  |||||||| |||||||    
T  4088029 aactttgaaaaaattatggatttgagaaatcataggtagtt 4087989  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 4585629 - 4585592
Alignment:
Q  114 ataacaaactttgaaaaaattatggatttatgaaatca 151  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4585629 ataacaaactttgaaaaaattatggatttaagaaatca 4585592  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 26677427 - 26677354
Alignment:
Q  15 gagacacaaataaatagttagagttaagaacaaaacttacgtgaattttcttatgtgttttctgtatggttctt 88  Q
    |||| |||||||||||| |||| || || |||||||| | |||||||||||||||||||||   ||||||||||    
T  26677427 gagaaacaaataaataggtagaattgagcacaaaactcatgtgaattttcttatgtgtttttcatatggttctt 26677354  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 12807983 - 12808012
Alignment:
Q  114 ataacaaactttgaaaaaattatggattta 143  Q
    ||||||||||||||||||||||||||||||    
T  12807983 ataacaaactttgaaaaaattatggattta 12808012  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 12257613 - 12257585
Alignment:
Q  114 ataacaaactttgaaaaaattatggattt 142  Q
    |||||||||||||||||||||||||||||    
T  12257613 ataacaaactttgaaaaaattatggattt 12257585  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 10017186 - 10017214
Alignment:
Q  114 ataacaaactttgaaaaaattatggattt 142  Q
    |||||||||||||||||||||||||||||    
T  10017186 ataacaaactttgaaaaaattatggattt 10017214  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 10254641 - 10254669
Alignment:
Q  114 ataacaaactttgaaaaaattatggattt 142  Q
    |||||||||||||||||||||||||||||    
T  10254641 ataacaaactttgaaaaaattatggattt 10254669  T

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