View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_high_18 (Length: 208)
Name: NF9860_high_18
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 5159400 - 5159580
Alignment:
| Q |
12 |
agaagcagagacacataagaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttat-ttgca |
110 |
Q |
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| T |
5159400 |
agaaccagagacacataagaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttatcttgca |
5159499 |
T |
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| Q |
111 |
aagcatggctatttgtggacccaacaagaagaaagcacatagccaatacctaccaaccaaactaatcacattatcctcaac |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5159500 |
aagcatggctatttgtggacccaacaagaagaaagcacatagccaataactaccaaccaaactaatcacattatcctcaac |
5159580 |
T |
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