View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_high_6 (Length: 369)
Name: NF9860_high_6
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 51487492 - 51487151
Alignment:
| Q |
18 |
aaatacaatatggaaccattcctacagttgctaaaaagaacatgaaattaccgaacctaatcaactaactnnnnnnntgtacattcccagttggatttct |
117 |
Q |
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| T |
51487492 |
aaatacaatatggaaccattcctacagttgctaaaaagaacatgagattaccgaacgtaatcaactaactaaaaaaatgtacattcccagttggatttct |
51487393 |
T |
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| Q |
118 |
aacatatgtttacactggatcattggtttctccaaacctgtaaattgaatacatccatcaatttcatgaaacacgcacaataaatgcaaattttaaatcg |
217 |
Q |
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| T |
51487392 |
aacatatgtttacactggatcattggtttctccaaacctgtaaattgaatacatccatcaatttcatgaaacacacacaataaatgcaaattttaaatcg |
51487293 |
T |
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| Q |
218 |
cgagcctagagaatcggacaaaagaatgtgtacatgagatataatctaccaacgcctttgagagcaaagcagtatatcaagaaacacaagtatatcaaat |
317 |
Q |
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| T |
51487292 |
cgagcctagagaatcggacaaaagaatgtgtacatgagatataatctaccaatgcctttgagagcaaagcagtatatcaagaaacacaagtatatcaaat |
51487193 |
T |
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| Q |
318 |
tcataaccaaagggagaggaagtttgcaatcagtaacctttg |
359 |
Q |
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| T |
51487192 |
tcataaccaaagggagaggaagtttgcaatcagtaacctttg |
51487151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 30199163 - 30199224
Alignment:
| Q |
126 |
tttacactggatcattggtttctccaaacctgtaaattgaat-acatccatcaatttcatga |
186 |
Q |
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| T |
30199163 |
tttacattggaaccttggtttctccagacctgtaaattgaatgacagacatcaatttcatga |
30199224 |
T |
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