View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_high_7 (Length: 368)
Name: NF9860_high_7
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 2016396 - 2016066
Alignment:
| Q |
17 |
gacatcgatataaactcagtgagaagcaatcactaatatgaaaatgacaaaaaagataggaggagctaaaatgaaaaggctacgtaaataaaatccagta |
116 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016396 |
gacattgatataaactcagtcagaagcaatcactaatatgaaaatgacaaaaaagataggaggagctaaaatgaaaaggctacgtaaataaaatccagta |
2016297 |
T |
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| Q |
117 |
gagtcaacaatgcccttaaaacgaataaatattactagtggacattttgataataaaagccaacaaagtcctgggactacgaaggctttaggccaggttt |
216 |
Q |
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| T |
2016296 |
gagtcaacaatgcccttaaaacgaataaatattactagtggacattttgataataaaagccaacaaagtcctgggactacgaaggctttaggccaggttt |
2016197 |
T |
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| Q |
217 |
gtgcgaaagtgaagattacatgtggcagagccccttggacacacagagaaagtttccaacattggctgctttagatcaatgtctaaagttgtgtgaattg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016196 |
gtgcgaaagtgaagattacatgtggcagagccccttggacacagagagaaagtttccaacattggctgctttagatcaatgtctaaagttgtgtgaattg |
2016097 |
T |
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| Q |
317 |
tcatattttgtagtacttttgaagtctgcaa |
347 |
Q |
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| T |
2016096 |
tcatattttgtagtacttttgaagtctgcaa |
2016066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 2019721 - 2019597
Alignment:
| Q |
222 |
aaagtgaagattacatgtggcagagccccttggacacacagagaaagtttccaacattggctgctttagatcaatgtctaaagttgtgtgaattgtcata |
321 |
Q |
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| T |
2019721 |
aaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttccaacattggatgctttagatcaatgtctaaagttgtgtgaattgtcata |
2019622 |
T |
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| Q |
322 |
ttttgtagtacttttgaagtctgca |
346 |
Q |
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||||| |||||||| ||| |||||| |
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| T |
2019621 |
ttttgaagtactttagaattctgca |
2019597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 2013013 - 2012897
Alignment:
| Q |
222 |
aaagtgaagattacatgtggcagagccccttggacacacagagaaagtttccaacattggctgctttagatcaatgtctaaagttgtgtgaattgtcata |
321 |
Q |
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||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||| | ||||||||| |||||| | |||||||||||| |
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| T |
2013013 |
aaagtgaagtttacatgtcgcagatccccttggacacaaagagaaagtttccaacattggatgctctggatcaatgtttaaagtactctgaattgtcata |
2012914 |
T |
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| Q |
322 |
ttttgtagtacttttga |
338 |
Q |
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| T |
2012913 |
ttttgtagtacttttga |
2012897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 2014420 - 2014312
Alignment:
| Q |
222 |
aaagtgaagattacatgtggcagagccccttggacacacagagaaagtttccaacattggctgctttagatcaatgtctaaagttgtgtgaattgtcata |
321 |
Q |
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|||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||| |
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| T |
2014420 |
aaagtgaagattacatgtctcagaaccccttggacaca--gagaaagtttccaacattggatactt---atcaatgtctaaagcagtgtgaattgtcata |
2014326 |
T |
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| Q |
322 |
ttttgtagtacttt |
335 |
Q |
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|||||||||||||| |
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| T |
2014325 |
ttttgtagtacttt |
2014312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 2006786 - 2006730
Alignment:
| Q |
222 |
aaagtgaagattacatgtggcagagccccttggacacacagagaaagtttccaacat |
278 |
Q |
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|||||||||| |||| | ||||||||||||||||| | |||||||||||||||||| |
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| T |
2006786 |
aaagtgaagaatacagttcgcagagccccttggacatagagagaaagtttccaacat |
2006730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 26248639 - 26248706
Alignment:
| Q |
56 |
gaaaatgacaaaaaagataggaggagctaaaatgaaaaggctacgtaaataaaatccagtagagtcaa |
123 |
Q |
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||||| |||||||| | ||||||| ||||| |||||||||||| |||||||| | |||||||||||| |
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| T |
26248639 |
gaaaaggacaaaaatgctaggaggggctaagttgaaaaggctacataaataaattacagtagagtcaa |
26248706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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