View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_1 (Length: 624)
Name: NF9860_low_1
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 4 - 608
Target Start/End: Complemental strand, 8264962 - 8264358
Alignment:
| Q |
4 |
agtttggtgttagaagttagtggcagaaaagagaggaagttgacgcaagtcttgtgactgtttgtttgagagatgaattttgtgtggctaatgaaaggtt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8264962 |
agtttggtgttagaagttagtggcagaaaagagaggaagttgacgcaagtcttatgactatttgtttgagagatgaattttgtgtggctaatgaaaggtt |
8264863 |
T |
|
| Q |
104 |
tggtgtttgattttgttttaatggagttttgatgcttcatatgttgaatgcgagagatgagggcctttgagatatgaaaattaatcattactttataaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264862 |
tggtgtttgattttgttttaatggagttttgatgcttcatatgttgaatgcgagagatgagggcctttgagatatgaaaattaatcattactttataaaa |
8264763 |
T |
|
| Q |
204 |
tgacacaaacctggtgtgccggtaaccatcattttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgtgtttgttagagcgttagctcc |
303 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8264762 |
tgacacaaacctggtgtgccggtaaccagcattttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgcgtttgttagagcgttagctcc |
8264663 |
T |
|
| Q |
304 |
tagcacttctcccacatacaaaggatttcaaatttgagattccaagaactcaccgatcaaacggagcacatttcctcaagaattgagaaaataaattcga |
403 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8264662 |
tagcacttctcccacatacaaaggattccaaatttgagattccaagaactcaccgatcaaatggagcacatttcctcaagaattgagaaaataaattcga |
8264563 |
T |
|
| Q |
404 |
ataaattgttgccaagacggaataaattgtcaatttgtgatggatttccaaatatgaatagggtttctattagatattttgaagtgggtgatttatctcc |
503 |
Q |
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| T |
8264562 |
ataaattgttgccaacacggaataagttgtcaatttgtgatggatttccaaatatgaatagggtttctattagatattttgaagtgggtgatttatctcc |
8264463 |
T |
|
| Q |
504 |
tatcttcaaaatcaacctcccatgcaggttctttatgaatccttcgactccctttgatgtatatgtcctcagagatttcgattgtaatctagtaaccttt |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264462 |
tatcttcaaaatcaacctcccatgcaggttctttatgaatccttcgactccctttgatgtatatgtcctcagagatttcgattgtaatctagtaaccttt |
8264363 |
T |
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| Q |
604 |
caaat |
608 |
Q |
| |
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||||| |
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| T |
8264362 |
caaat |
8264358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 38789334 - 38789218
Alignment:
| Q |
4 |
agtttggtgttagaagttagtggcagaaaagagaggaagttgacgcaagtcttgtgactgtttgtttgagagatgaattttgtgtggctaatgaaaggtt |
103 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
38789334 |
agtttgctgttagaa-ttagtggcagaaaagagaggaagtcgacgtaagtcttgtgactgtttgtttgagagatgagttttgcgttgctaatgaaaggtc |
38789236 |
T |
|
| Q |
104 |
tggtgtttgattttgttt |
121 |
Q |
| |
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|||| |||| ||||||| |
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| T |
38789235 |
cggtgcttgactttgttt |
38789218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 38789138 - 38789063
Alignment:
| Q |
235 |
ttttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgtgtttgttagagcgttagctcctagcact |
310 |
Q |
| |
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|||| |||||||||| |||||||||||||||| || ||||||| | |||||||||||| || || ||||||||| |
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| T |
38789138 |
ttttgaaaagagtaatgtggcttaatttagaagtgtgcgttcatctgagtttgttagagcatttgcgcctagcact |
38789063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 605
Target Start/End: Original strand, 16574730 - 16574854
Alignment:
| Q |
480 |
ttttgaagtgggtgatttatctcctatcttcaaaatcaacctcccatgcaggttctttatgaatccttcgactccctttgatgtatatgtcctcagagat |
579 |
Q |
| |
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||||| |||||| |||||||||||| |||| ||||||||||||||||| ||| | | | || || |||| | |||| ||| ||||| ||||||||||| |
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| T |
16574730 |
ttttgcagtgggagatttatctcctttcttaaaaatcaacctcccatggaggatatctttgcattcttcaattccc-ttggtgtattcatcctcagagat |
16574828 |
T |
|
| Q |
580 |
ttcgattgtaatctagtaacctttca |
605 |
Q |
| |
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|| ||||| ||| |||| |||||||| |
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| T |
16574829 |
tttgattgaaatttagtcacctttca |
16574854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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