View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9860_low_10 (Length: 378)
Name: NF9860_low_10
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 44089002 - 44089216
Alignment:
| Q |
18 |
catcaagaaaagagattgttttaaagattcccgtaaaaatcat-aaattttctaaatcaccattctctcctccaagggtttacccttctacgactacgac |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44089002 |
catcaagaaaagagattattttaaagattccggtaaaaatcattaaattttctaaatcaccattctctcctccaagggtttacccttctacgactacgac |
44089101 |
T |
|
| Q |
117 |
agagccactgctctataactctattcactatcagttttctatatcttaacagtatcacttgctttttggataactttcctgtagatttagaattctagta |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44089102 |
agagccactgctctataactctactcactatcagttttctatatcttaacagtatcacttgctttttggataactttcctgtagatttagaattctagta |
44089201 |
T |
|
| Q |
217 |
atgcttgtttccatc |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44089202 |
atgcttgtttccatc |
44089216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 44089272 - 44089403
Alignment:
| Q |
230 |
tcccactagaaggagtttgctacatgaagtagtcaacgtcgtaaagtcctatattcggtccatctactaggcggcatttagcatgcaagcttgtgtgtgt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44089272 |
tcccactagaaggagtttgctacatgaagtagtcaacgtcgtaaagtcctatattcggtccatctactaggcggcatttagcatgcaagcttgtgtgtgt |
44089371 |
T |
|
| Q |
330 |
gacaattattgaggaggatatggtatccttcc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44089372 |
gacaattattgaggaggatatggtatccttcc |
44089403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 44080874 - 44080994
Alignment:
| Q |
230 |
tcccactagaaggagtttgctacatgaagtagtcaacgtcgtaaagtcctatattcggtccatctactaggcggcatttagcatgcaagctt--gtgtgt |
327 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
44080874 |
tcccactaggaggagtttgctacatgaagtagtcaatgtcgtaaagtcctatattcagtccatctactaggtaccatttagtatgcaagcttgcgtgtgt |
44080973 |
T |
|
| Q |
328 |
gtgacaattattgaggaggat |
348 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
44080974 |
gtgacaattattaaggaggat |
44080994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 44080783 - 44080818
Alignment:
| Q |
196 |
tgtagatttagaattctagtaatgcttgtttccatc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44080783 |
tgtagatttagaattctagtaatgcttgtttccatc |
44080818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University